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[190840_at]

Description R53.7 /REP_DB=WormBase Gene ID /WP=CE03577 /TR=Q22022 /GB=CAA91351.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase like protein
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 96      6grp_total > 96      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1676
1 2 3 4 range
A 532.3
(-2.9)
P 		500.1
(-3)
P 		543.5
(-2.8)
P 		1905.7
(3)
P 		1406
B 572.7
(-2.8)
P 		548.3
(-2.9)
P 		512.5
(-3)
P 		2176.3
(3)
P 		1664
C 541.1
(-3)
P 		639.2
(-2.6)
P 		563.1
(-2.9)
P 		1909.9
(3)
P 		1369
avr 548.7
(-3) 		562.5
(-2.9) 		539.7
(-3) 		1997.3
(3) 		1458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 509
(-3)
P 		746.2
(-1.7)
P 		644.4
(-2.2)
P 		942.6
(-0.5)
P 		1052.3
(0.1)
P 		1568.1
(3)
P 		1059
B 616.6
(-3)
P 		671.3
(-2.5)
P 		719.3
(-2)
P 		867.1
(-0.6)
P 		1037.2
(1)
P 		1243.7
(3)
P 		627
C 711.2
(-2.7)
P 		686
(-3)
P 		866
(-1.2)
P 		865.5
(-1.2)
P 		1177.7
(2)
P 		1278.9
(3)
P 		593
avr 612.3
(-3) 		701.2
(-2.3) 		743.2
(-2) 		891.7
(-0.8) 		1089.1
(0.8) 		1363.6
(3) 		751
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 193.8
(0)
P 		108.6
(-3)
P 		142.1
(-1.8)
P 		279
(3)
P 		170
B 182.6
(-1.9)
P 		135.4
(-2.7)
P 		118.8
(-3)
P 		463.8
(3)
P 		345
C 179.1
(-3)
P 		183.8
(-2.8)
P 		196.3
(-2.3)
P 		322
(3)
P 		143
avr 185.2
(-1.8) 		142.6
(-3) 		152.4
(-2.7) 		354.9
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 93.8
(-3)
P 		265.4
(0.6)
P 		140.3
(-2)
P 		239.1
(0)
P 		317.6
(1.7)
P 		381.8
(3)
P 		288
B 214.5
(-2.2)
P 		223.5
(-2)
P 		174.7
(-3)
P 		229.7
(-1.9)
P 		421.4
(2.1)
P 		463.8
(3)
P 		289
C 263.6
(-0.9)
P 		209.3
(-2.2)
P 		220.4
(-1.9)
P 		174
(-3)
P 		381.1
(1.9)
P 		428.1
(3)
P 		254
avr 190.6
(-2.7) 		232.7
(-1.7) 		178.5
(-3) 		214.3
(-2.1) 		373.4
(1.8) 		424.6
(3) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3595
Sequence Type Exemplar sequence
Representative Public ID R53.7 NCBI
Target Description R53.7 /REP_DB=WormBase Gene ID /WP=CE03577 /TR=Q22022 /GB=CAA91351.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063754(11), NM_182171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063754 NCBI Caenorhabditis elegans R53.7a (R53.7) mRNA, complete cds. 11/11 None
NM_182171 NCBI Caenorhabditis elegans R53.7b (R53.7) mRNA, complete cds. 11/11 None
SNAP00000040705 ENSEMBL cdna:SNAP chromosome:CEL140:II:9971465:9973335:-1 11/11 None
GENEFINDER00000040711 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9971465:9974615:-1 11/11 None
R53.7a.1 ENSEMBL cdna:known chromosome:CEL140:II:9970975:9974615:-1 gene:R53.7 11/11 A 
R53.7a.2 ENSEMBL cdna:known chromosome:CEL140:II:9970975:9974957:-1 gene:R53.7 11/11 A 
R53.7a.3 ENSEMBL cdna:known chromosome:CEL140:II:9971465:9974617:-1 gene:R53.7 11/11 None
R53.7b ENSEMBL cdna:known chromosome:CEL140:II:9971465:9973349:-1 gene:R53.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9971461-9974612(-) 100.0 100.0
Public Domain and Genome References
Ensembl R53.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91351 Hypothetical protein R53.7a [Caenorhabditis elegans] ref|NP_496155.1| R53.7a [Caenorhabditis elegans] 0.0
blast CAD59154 Hypothetical protein R53.7b [Caenorhabditis elegans] ref|NP_871971.1| R53.7b [Caenorhabditis elegans] 0.0
blast CAE57935 Hypothetical protein CBG00989 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 2.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 7.9E-8
Pfam IPR000644 EMBL-EBI CBS domain 8.3E-12
Pfam IPR000644 EMBL-EBI CBS domain 0.0096
Pfam IPR000644 EMBL-EBI CBS domain 2.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 7.9E-8
Pfam IPR000644 EMBL-EBI CBS domain 8.3E-12
Pfam IPR000644 EMBL-EBI CBS domain 0.0096
Pfam IPR000644 EMBL-EBI CBS domain 2.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 7.9E-8
Pfam IPR000644 EMBL-EBI CBS domain 8.3E-12
Pfam IPR000644 EMBL-EBI CBS domain 0.0096
Sequence
Target Sequence 
>C. ELEGANS:190840_AT
ttctgttcgacgtgtcatcgcagcaattcacaagcaaaacagaagtcttcactttgcaca
gtggctgtccaaatcgattggaatgtctgccattggaacatgggagaatgttgcagtgat
ttctcagaatgaaaccgtatacagagctatggaggatatgttaggattccattattccgc
gcttccagtcgtcgattccaagcaaaatgtgatcggcgttatcacgaagacagatatttg
caaggcacttccacgtaacttcatcgaaccaaagcgttggcttcaggagactaaagtgtc
tgatattcttcacatctgtaagagtcaaatactgatctcgtcggctgacagcgttgggca
ggttctagacacattactcgcaggagacacacaaagtgcattcgctattcacaatggaaa
ggcgattggtgtgatttctctaacagatttcctatcacacattcttcgttctccattggc
aacaactgatgaagaaccatcacaggagccagcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTCGACGTGTCATCGCAGCA 43 693 813 Antisense
GAAGTCTTCACTTTGCACAGTGGCT 52 337 854 Antisense
GTTAGGATTCCATTATTCCGCGCTT 607 445 972 Antisense
GCACTTCCACGTAACTTCATCGAAC 131 317 1057 Antisense
GTGTCTGATATTCTTCACATCTGTA 382 487 1108 Antisense
CAAATACTGATCTCGTCGGCTGACA 409 191 1138 Antisense
GGCTGACAGCGTTGGGCAGGTTCTA 58 537 1155 Antisense
GCAGGTTCTAGACACATTACTCGCA 13 311 1170 Antisense
AGATTTCCTATCACACATTCTTCGT 31 67 1257 Antisense
ATTCTTCGTTCTCCATTGGCAACAA 623 11 1273 Antisense
GAAGAACCATCACAGGAGCCAGCGA 45 341 1303 Antisense
Sequence Source Affymetrix Proprietary Database