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[190839_at] calcium binding proteins

Description C16H3.1 /REP_DB=WormBase Gene ID /WP=CE08235 /TR=Q94172 /GB=AAB07584.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium binding proteins
Cluster 6grp_total > 14      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 57.2
(-2.9)
P 		102.2
(1.1)
A 		56.2
(-3)
A 		123.5
(3)
A 		67
B 102
(1.4)
P 		66.5
(-3)
A 		66.2
(-3)
A 		115.5
(3)
P 		49
C 118.4
(2.2)
P 		39.9
(-2.4)
P 		30
(-3)
A 		132.2
(3)
A 		102
avr 92.5
(0.4) 		69.5
(-1.5) 		50.8
(-3) 		123.7
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 83.2
(3)
A 		81.5
(2.8)
P 		50.5
(-1.4)
A 		50.1
(-1.4)
A 		38.1
(-3)
A 		43.1
(-2.3)
A 		45
B 95.9
(3)
P 		66.5
(0.4)
M 		55.2
(-0.6)
A 		87.3
(2.2)
P 		28.3
(-3)
A 		39.7
(-2)
M 		68
C 83.2
(0.1)
P 		122.2
(3)
A 		66.5
(-1.1)
M 		64.5
(-1.3)
A 		43.3
(-2.8)
A 		41.2
(-3)
A 		81
avr 87.4
(2.7) 		90.1
(3) 		57.4
(-0.7) 		67.3
(0.4) 		36.6
(-3) 		41.3
(-2.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20.8
(1.9)
P 		22.2
(3)
A 		14.7
(-3)
A 		18.1
(-0.3)
A 		8
B 32.5
(3)
P 		16.4
(-2.6)
A 		15.3
(-3)
A 		24.6
(0.2)
P 		17
C 39.2
(3)
P 		11.5
(-2.8)
P 		10.5
(-3)
A 		22.3
(-0.5)
A 		29
avr 30.8
(3) 		16.7
(-1.9) 		13.5
(-3) 		21.7
(-0.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.3
(-1.4)
A 		29
(3)
P 		11
(-2.8)
A 		12.7
(-2.3)
A 		11.5
(-2.7)
A 		10.5
(-3)
A 		19
B 33.4
(3)
P 		22.1
(-0.1)
M 		13.4
(-2.5)
A 		23.1
(0.2)
P 		11.5
(-3)
A 		14.8
(-2.1)
M 		22
C 30.9
(1.4)
P 		37.3
(3)
A 		16.9
(-2)
M 		13
(-3)
A 		14
(-2.8)
A 		13.8
(-2.8)
A 		24
avr 26.5
(2) 		29.5
(3) 		13.8
(-2.5) 		16.3
(-1.6) 		12.3
(-3) 		13
(-2.8) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17902
Sequence Type Exemplar sequence
Representative Public ID C16H3.1 NCBI
Target Description C16H3.1 /REP_DB=WormBase Gene ID /WP=CE08235 /TR=Q94172 /GB=AAB07584.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=calcium binding proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078445(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078445 NCBI Caenorhabditis elegans C16H3.1 (C16H3.1) mRNA, complete cds. 10/11 None
C16H3.1 ENSEMBL cdna:known chromosome:CEL140:X:17617736:17619367:1 gene:C16H3.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17617734-17619366(+) 100.0 100.0
Public Domain and Genome References
Gene Title calcium binding proteins
Ensembl C16H3.1
Entrez Gene 182694 Entrez gene
SwissProt Q94172 EMBL-EBI
WormBase CE35404 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07584 Hypothetical protein C16H3.1 [Caenorhabditis elegans] ref|NP_510846.2| C16H3.1 [Caenorhabditis elegans] 1.0E-118
blast CAE58699 Hypothetical protein CBG01881 [Caenorhabditis briggsae] 3.0E-86
blast AAH97806 Unknown (protein for MGC:115522) [Xenopus laevis] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.025
Sequence
Target Sequence 
>C. ELEGANS:190839_AT
gaagaattggacacacagcctgcaatagaaaggcaaacaccgccaagcatcgattacttg
attgaaatcactaatttttccaaacgggagattcaacaattgtatagatcgttcaaggag
ttatggccaattggaactgtcgacttagagcaatttcagttaatttatgcgagtatattt
ccaaatggagactcaaaaggttacgcggaacttgtcttcaaaaatattgatcaaaaccga
gatttcatcacaaactactccaaaattgcaaaagggacacttgacgaacgactcgactgg
atattcactctctatgacaccaatcgatgcggtttcctagcttacaacgagattttccat
gttgtgaagtggaacctcaacattgcaaataacggaaaagtttccaaagccgaatttctt
caacgatgccgttccgattcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAATTGGACACACAGCCTGCAA 125 341 46 Antisense
GCAAACACCGCCAAGCATCGATTAC 700 317 78 Antisense
GGAACTGTCGACTTAGAGCAATTTC 632 529 178 Antisense
ACCGAGATTTCATCACAAACTACTC 530 89 281 Antisense
GGGACACTTGACGAACGACTCGACT 648 491 319 Antisense
ACGACTCGACTGGATATTCACTCTC 415 91 333 Antisense
CACTCTCTATGACACCAATCGATGC 75 199 351 Antisense
AATCGATGCGGTTTCCTAGCTTACA 207 169 367 Antisense
GTGAAGTGGAACCTCAACATTGCAA 633 481 409 Antisense
AGCCGAATTTCTTCAACGATGCCGT 66 83 453 Antisense
TCAACGATGCCGTTCCGATTCAGAC 405 631 465 Antisense
Sequence Source Affymetrix Proprietary Database