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[190836_s_at] Yeast LPG22P protein like

Description ZK863.3 /REP_DB=WormBase Gene ID /WP=CE15439 /TR=Q23651 /GB=CAB01454.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast LPG22P protein like
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 74      6grp_total > 75      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1639
1 2 3 4 range
A 853.6
(-1.9)
P 		574.6
(-3)
P 		619.3
(-2.8)
P 		2081.6
(3)
P 		1507
B 870
(-2.1)
P 		634.8
(-3)
P 		660.3
(-2.9)
P 		2213.6
(3)
P 		1579
C 893.5
(-1.6)
P 		595.2
(-3)
P 		675
(-2.6)
P 		1881.9
(3)
P 		1287
avr 872.4
(-1.9) 		601.5
(-3) 		651.5
(-2.8) 		2059
(3) 		1458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 642.2
(-1.6)
P 		584.8
(-3)
P 		641.5
(-1.6)
P 		766.7
(1.4)
P 		651.1
(-1.4)
P 		832.7
(3)
P 		248
B 733.4
(3)
P 		700
(0.7)
P 		677.8
(-0.9)
P 		647.7
(-3)
P 		674.4
(-1.1)
P 		728.5
(2.7)
P 		86
C 709
(-0)
P 		580.4
(-3)
P 		635.2
(-1.7)
P 		837.9
(3)
P 		626.7
(-1.9)
P 		803.4
(2.2)
P 		258
avr 694.9
(-0.4) 		621.7
(-3) 		651.5
(-1.9) 		750.8
(1.7) 		650.7
(-2) 		788.2
(3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 310.8
(3)
P 		124.7
(-3)
P 		161.9
(-1.8)
P 		304.7
(2.8)
P 		186
B 277.4
(-0.7)
P 		156.8
(-2.9)
P 		153
(-3)
P 		471.7
(3)
P 		319
C 295.8
(2.1)
P 		171.1
(-3)
P 		235.3
(-0.4)
P 		317.3
(3)
P 		146
avr 294.7
(1) 		150.9
(-3) 		183.4
(-2.1) 		364.6
(3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 118.4
(-3)
P 		208
(3)
P 		139.7
(-1.6)
P 		194.5
(2.1)
P 		196.5
(2.2)
P 		202.7
(2.6)
P 		90
B 255.2
(2)
P 		233
(0.8)
P 		164.6
(-3)
P 		171.6
(-2.6)
P 		274
(3)
P 		271.6
(2.9)
P 		109
C 262.8
(2.7)
P 		177.1
(-2.1)
P 		161.7
(-3)
P 		168.5
(-2.6)
P 		202.8
(-0.7)
P 		269
(3)
P 		107
avr 212.1
(0.7) 		206
(0.3) 		155.3
(-3) 		178.2
(-1.5) 		224.4
(1.5) 		247.8
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190836_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13460
Sequence Type Exemplar sequence
Representative Public ID ZK863.3 NCBI
Target Description ZK863.3 /REP_DB=WormBase Gene ID /WP=CE15439 /TR=Q23651 /GB=CAB01454.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Yeast LPG22P protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073654 NCBI Caenorhabditis elegans ZK863.3 (ZK863.3) mRNA, complete cds. 11/11 None
SNAP00000039741 ENSEMBL cdna:SNAP chromosome:CEL140:V:12182172:12183998:-1 11/11 None
GENEFINDER00000039753 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12182172:12183998:-1 11/11 None
ZK863.3 ENSEMBL cdna:known chromosome:CEL140:V:12182100:12184019:-1 gene:ZK863.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12182171-12184019(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast LPG22P protein like
Ensembl ZK863.3
Entrez Gene 179669 Entrez gene
SwissProt Q23651 EMBL-EBI
WormBase CE15439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248508_AT radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein at
CANINE:1588412_AT similar to elongation protein 3 homolog cfa
CANINE:1587699_AT similar to elongation protein 3 homolog cfa
CANINE_2:CFA.13719.1.A1_AT similar to elongation protein 3 homolog cfa
CANINE_2:CFA.18880.1.S1_S_AT similar to elongation protein 3 homolog cfa
CANINE_2:CFAAFFX.13226.1.S1_S_AT similar to elongation protein 3 homolog cfa
CANINE_2:CFAAFFX.13237.1.S1_AT similar to elongation protein 3 homolog cfa
DROSOPHILA_2:1625244_AT dm
DROSGENOME1:145760_AT dm
CHICKEN:GGA.12757.1.S1_AT similar to Hypothetical protein MGC69446 gga
HG-U133_PLUS_2:221094_S_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U133A:221094_S_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U133A_2:221094_S_AT elongation protein 3 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA454745_AT elongation protein 3 homolog (S. cerevisiae) hs
HU35KSUBA:RC_AA482031_AT elongation protein 3 homolog (S. cerevisiae) hs
U133_X3P:G8922417_3P_A_AT elongation protein 3 homolog (S. cerevisiae) hs
U133_X3P:HS.267905.2.A1_3P_X_AT elongation protein 3 homolog (S. cerevisiae) hs
U133_X3P:227075_3P_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:227075_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U133B:227075_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U95B:53965_AT elongation protein 3 homolog (S. cerevisiae) hs
HG-U95D:68732_AT Elongation protein 3 homolog (S. cerevisiae) hs
HG-U95D:84248_AT Elongation protein 3 homolog (S. cerevisiae) hs
MOUSE430A_2:1426643_AT elongation protein 3 homolog (S. cerevisiae) mm
MOUSE430_2:1426643_AT elongation protein 3 homolog (S. cerevisiae) mm
MOE430A:1426643_AT elongation protein 3 homolog (S. cerevisiae) mm
MG-U74AV2:95717_AT elongation protein 3 homolog (S. cerevisiae) mm
MG-U74CV2:170816_AT elongation protein 3 homolog (S. cerevisiae) mm
MOE430A:1436762_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOUSE430A_2:1436762_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOUSE430_2:1436762_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOE430A:1437338_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOUSE430A_2:1437338_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOUSE430_2:1437338_X_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOUSE430_2:1443452_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MOE430B:1443452_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MU19KSUBA:TC17485_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
MU19KSUBB:TC31089_AT Elongation protein 3 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4482574) mm
YEAST_2:1777051_AT Histone acetyltransferase subunit of the Elongator complex, which is a component of the RNA polymerase II holoenzyme; activity is directed specifically towards histones H3 and H4; disruption confers resistance to K. lactis zymotoxin Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01454 Hypothetical protein ZK863.3 [Caenorhabditis elegans] ref|NP_506055.1| ZK863.3 [Caenorhabditis elegans] 0.0
blast CAE75409 Hypothetical protein CBG23399 [Caenorhabditis briggsae] 0.0
blast AAH67990 Elongation protein 3 homolog [Xenopus tropicalis] ref|NP_001001215.1| elongation protein 3 homolog [Xenopus tropicalis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007197 EMBL-EBI Radical SAM 3.2E-13
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 6.2E-14
Pfam IPR007197 EMBL-EBI Radical SAM 3.2E-13
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 6.2E-14
Sequence
Target Sequence 
>C. ELEGANS:190836_S_AT
gttcttgttgatttgattgctactatcttatcattagttccgccatggacacgtgtgtat
cgagtgcaaagagatatccccatgccattagtatcttcaggcgttgaacatggaaatctt
cgtgaacatgcgatggcaaaaatgaaagaactcggtttgaaatgtcgagacgttcgaacg
agagaagttggaattcaagagattcataataaagttcgtcctgaagatgtggagctcatt
aggcgagattacacagcaaatggtggttgggagacgtttatctcttatgaggatccgaaa
caagacattcttattggacttcttcgattgagaaaaatttcagataaagcccatcggcca
gagttgaagggtaatgtgtcagtggttcgcgagttgcatgtatacggatccgtcgtttcg
gtagcggatcgtgatcccaagaagttccagcatcaaggatacggttcacttttgatggaa
gaagctgaaaggatagccagagaagaacatggatccgataaaatcgcagtcatctcgggc
gttggaactcgagagtactaccgtaaacttggatacgagctggatggtccttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTGTTGATTTGATTGCTACTA 222 445 1051 Antisense
GCTACTATCTTATCATTAGTTCCGC 673 301 1069 Antisense
TTAGTTCCGCCATGGACACGTGTGT 625 677 1084 Antisense
GAGTGCAAAGAGATATCCCCATGCC 406 401 1112 Antisense
TCCCCATGCCATTAGTATCTTCAGG 139 597 1127 Antisense
GAAATCTTCGTGAACATGCGATGGC 397 363 1163 Antisense
AATGGTGGTTGGGAGACGTTTATCT 468 161 1309 Antisense
GACATTCTTATTGGACTTCTTCGAT 351 371 1354 Antisense
GGGTAATGTGTCAGTGGTTCGCGAG 325 497 1419 Antisense
GAGTTGCATGTATACGGATCCGTCG 191 397 1441 Antisense
GGATACGAGCTGGATGGTCCTTATA 19 511 1621 Antisense
Sequence Source Affymetrix Proprietary Database