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[190835_at] Ogre family

Description ZK792.2 /REP_DB=WormBase Gene ID /WP=CE27419 /GEN=inx-8 /TR=SW:Q23593 /GB=CAA92633.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ogre family
Cluster 6grp_total > 94      4grp_total > 57      6grp_cgc > 89      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 48.3
(1.3)
A 		50.9
(1.6)
M 		64.6
(3)
P 		7.3
(-3)
A 		57
B 31.3
(-3)
A 		78.9
(1.1)
A 		101.5
(3)
P 		60.5
(-0.5)
A 		70
C 26.8
(-1.6)
A 		66.1
(3)
A 		50.1
(1.1)
A 		15.2
(-3)
A 		51
avr 35.5
(-1.9) 		65.3
(2.1) 		72.1
(3) 		27.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 43
(-3)
A 		57.3
(-2.9)
A 		49.9
(-2.9)
A 		99.7
(-2.5)
P 		730.7
(3)
P 		372.1
(-0.1)
P 		688
B 34.6
(-2.7)
A 		6.7
(-3)
A 		53.6
(-2.6)
P 		92.9
(-2.2)
P 		649
(3)
P 		466.9
(1.3)
P 		642
C 32.1
(-3)
A 		57.7
(-2.7)
A 		40.2
(-2.9)
A 		103.1
(-2.3)
P 		636.6
(3)
P 		456
(1.2)
P 		605
avr 36.6
(-3) 		40.6
(-3) 		47.9
(-2.9) 		98.6
(-2.4) 		672.1
(3) 		431.7
(0.7) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.6
(3)
A 		11
(0.6)
M 		16.9
(2.7)
P 		1.1
(-3)
A 		17
B 10
(-3)
A 		19.5
(1.2)
A 		23.5
(3)
P 		12.9
(-1.7)
A 		14
C 8.9
(-0.7)
A 		19
(3)
A 		17.5
(2.5)
A 		2.6
(-3)
A 		16
avr 12.2
(-0.1) 		16.5
(1.8) 		19.3
(3) 		5.5
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 7.9
(-3)
A 		20.4
(-2.6)
A 		10.9
(-2.9)
A 		25.3
(-2.5)
P 		220.5
(3)
P 		90.6
(-0.7)
P 		213
B 12.1
(-2.8)
A 		2.2
(-3)
A 		13
(-2.8)
P 		24.6
(-2.5)
P 		263.7
(3)
P 		174.1
(0.9)
P 		262
C 11.9
(-2.9)
A 		17.6
(-2.8)
A 		10.2
(-3)
A 		20.7
(-2.7)
P 		206
(3)
P 		152.6
(1.4)
P 		196
avr 10.6
(-3) 		13.4
(-2.9) 		11.4
(-3) 		23.5
(-2.6) 		230.1
(3) 		139.1
(0.5) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9066
Sequence Type Exemplar sequence
Representative Public ID ZK792.2 NCBI
Target Description ZK792.2 /REP_DB=WormBase Gene ID /WP=CE27419 /GEN=inx-8 /TR=SW:Q23593 /GB=CAA92633.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ogre family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069808 NCBI Caenorhabditis elegans INneXin family member (inx-8) (inx-8) mRNA, complete cds. 11/11 None
SNAP00000023870 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11673843:11675428:1 11/11 None
GENEFINDER00000023879 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11666302:11675428:1 11/11 None
ZK792.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11673813:11675540:1 gene:ZK792.2 11/11 None
ZK792.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:11673814:11675540:1 gene:ZK792.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11672986-11675434(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ogre family
Gene Symbol inx-8
Ensembl ZK792.2
Entrez Gene 178101 Entrez gene
SwissProt Q23593 EMBL-EBI
WormBase CE27419 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92633 Hypothetical protein ZK792.2 [Caenorhabditis elegans] ref|NP_502209.1| INneXin family member (inx-8) [Caenorhabditis elegans] sp|Q23593|INX8_CAEEL Innexin-8 0.0
blast T27993 hypothetical protein ZK792.2 - Caenorhabditis elegans 0.0
blast CAB54515 Hypothetical protein ZK792.8 [Caenorhabditis elegans] ref|NP_502208.1| ZK792.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502209.1 5 29-51,101-123,184-206,213-235,271-293
ZK792.2.1 5 29-51,101-123,184-206,213-235,271-293
ZK792.2.2 5 29-51,101-123,184-206,213-235,271-293
SNAP00000023870 5 29-51,101-123,184-206,213-235,271-293
GENEFINDER00000023879 5 1086-1108,1165-1187,1248-1270,1277-1299,1335-1357
Sequence
Target Sequence 
>C. ELEGANS:190835_AT
gtacatggtctattcagttatcaagattctctacctcgtcaatgcaattgctcaatttgt
aattattgcaatctttcttggacagaaacggaatttgttctggggatggactctctttat
gaatcttctcaatggaatcacttgggaaactactggattattccctcgcgttaccttctg
tgacttccaagttcgtgagatggccggaaataatcgagatgaaactgtcgagtgtgtcat
tggaatcaatgaattcaatgagaaaatcttcttgttcttctggttctggcttgtgtttct
cgtcttctccactctcatcgctcatttctacaacgctgctcaaattgtgaagccatactt
catccacagtcttctttttgctatccgggatcatgatattgtcgatcagaaggaattgtt
cagagagtttggagagaagtatctcacaatggacggaaaacttatactgagttttgtcaa
atctcagagtgacttggtagcatcggaggttgccgtggagatgtacagcgactttttaga
agcaagagaccgtgccaacatcgctgaggacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATGGTCTATTCAGTTATCAAG 212 461 975 Antisense
AGTTATCAAGATTCTCTACCTCGTC 529 63 990 Antisense
TTCTCTACCTCGTCAATGCAATTGC 446 691 1001 Antisense
TTACCTTCTGTGACTTCCAAGTTCG 217 679 1145 Antisense
AACTGTCGAGTGTGTCATTGGAATC 581 141 1197 Antisense
TCATCGCTCATTTCTACAACGCTGC 346 621 1289 Antisense
GTGAAGCCATACTTCATCCACAGTC 380 481 1321 Antisense
CTTCTTTTTGCTATCCGGGATCATG 504 221 1345 Antisense
GAGTGACTTGGTAGCATCGGAGGTT 208 401 1461 Antisense
AGCAAGAGACCGTGCCAACATCGCT 370 73 1515 Antisense
CGTGCCAACATCGCTGAGGACAAAT 423 245 1525 Antisense
Sequence Source Affymetrix Proprietary Database