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[190832_at] Drosophila protein X like

Description F54E4.1 /REP_DB=WormBase Gene ID /WP=CE11074 /TR=Q93785 /GB=CAB01916.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila protein X like
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 453.1
(3)
P 		176.4
(-2.8)
P 		167.9
(-3)
P 		237.3
(-1.5)
P 		285
B 391
(3)
P 		200.4
(-2)
P 		164.2
(-3)
P 		167.9
(-2.9)
P 		227
C 384.4
(3)
P 		197.7
(-1.5)
P 		224.1
(-0.9)
P 		137.5
(-3)
P 		247
avr 409.5
(3) 		191.5
(-2.7) 		185.4
(-2.9) 		180.9
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 376
(3)
P 		304.4
(1)
P 		157.7
(-3)
P 		176.9
(-2.5)
P 		207.3
(-1.6)
P 		180.1
(-2.4)
P 		218
B 456.2
(3)
P 		316.8
(0.3)
P 		191.3
(-2.2)
P 		217
(-1.7)
P 		149.3
(-3)
P 		169
(-2.6)
P 		307
C 375.2
(3)
P 		216.6
(-0.9)
P 		284.1
(0.8)
P 		152.7
(-2.5)
P 		168.3
(-2.1)
P 		131.1
(-3)
P 		244
avr 402.5
(3) 		279.3
(-0) 		211
(-1.7) 		182.2
(-2.5) 		175
(-2.6) 		160.1
(-3) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 165
(3)
P 		38.3
(-2.8)
P 		43.9
(-2.6)
P 		34.7
(-3)
P 		130
B 124.7
(3)
P 		49.5
(-2.1)
P 		38.1
(-2.8)
P 		35.8
(-3)
P 		89
C 127.3
(3)
P 		56.8
(-1.1)
P 		78.1
(0.2)
P 		23.2
(-3)
P 		104
avr 139
(3) 		48.2
(-2.1) 		53.4
(-1.8) 		31.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 69.3
(-0.2)
P 		108.3
(3)
P 		34.4
(-3)
P 		44.9
(-2.1)
P 		62.6
(-0.7)
P 		43.8
(-2.2)
P 		74
B 158.7
(3)
P 		105.4
(0.2)
P 		46.4
(-3)
P 		57.5
(-2.4)
P 		60.7
(-2.2)
P 		63
(-2.1)
P 		112
C 139.1
(3)
P 		66.1
(-1)
P 		72.3
(-0.7)
P 		30.7
(-3)
P 		54.5
(-1.7)
P 		43.9
(-2.3)
P 		108
avr 122.4
(3) 		93.3
(0.8) 		51
(-2.5) 		44.4
(-3) 		59.3
(-1.9) 		50.2
(-2.6) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17983
Sequence Type Exemplar sequence
Representative Public ID F54E4.1 NCBI
Target Description F54E4.1 /REP_DB=WormBase Gene ID /WP=CE11074 /TR=Q93785 /GB=CAB01916.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila protein X like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078030 NCBI Caenorhabditis elegans RaB Connectin related family member (rbc-1) (rbc-1) mRNA, complete cds. 11/11 None
GENEFINDER00000032276 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14610796:14624180:1 11/11 None
SNAP00000032267 ENSEMBL cdna:SNAP chromosome:CEL140:X:14622678:14624180:1 11/11 None
F54E4.1 ENSEMBL cdna:known chromosome:CEL140:X:14610796:14624767:1 gene:F54E4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14610795-14624180(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosophila protein X like
Gene Symbol rbc-1
Ensembl F54E4.1
Entrez Gene 181558 Entrez gene
SwissProt Q93785 EMBL-EBI
WormBase CE11074 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587604_AT similar to Dmx-like 2 cfa
CANINE_2:CFA.1629.1.A1_AT similar to Dmx-like 2 cfa
CANINE_2:CFAAFFX.23737.1.S1_S_AT similar to Dmx-like 2 cfa
DROSOPHILA_2:1635652_AT dm
DROSGENOME1:143986_AT dm
HU35KSUBA:RC_C14891_AT Dmx-like 2 hs
U133_X3P:HS.272193.0.S1_3P_X_AT Dmx-like 2 hs
U133_X3P:HS.13264.0.S1_3P_AT Dmx-like 2 hs
U133_X3P:215761_3P_AT Dmx-like 2 hs
HG-U133A_2:212820_AT Dmx-like 2 hs
HG-U133_PLUS_2:212820_AT Dmx-like 2 hs
HG-U133A:212820_AT Dmx-like 2 hs
HG-U133A_2:215761_AT Dmx-like 2 hs
HG-U133_PLUS_2:215761_AT Dmx-like 2 hs
HG-U133A:215761_AT Dmx-like 2 hs
HG-U95AV2:41716_AT Dmx-like 2 hs
HG-U95B:42899_AT Dmx-like 2 hs
HU35KSUBC:RC_AA461311_AT Dmx-like 2 hs
Protein Similarities
Method ID Description E-Value
blast CAB01916 Hypothetical protein F54E4.1 [Caenorhabditis elegans] ref|NP_510431.1| RaB Connectin related family member (rbc-1) [Caenorhabditis elegans] 0.0
blast CAE63207 Hypothetical protein CBG07562 [Caenorhabditis briggsae] 0.0
blast AAT01618 Dmx-like 1 [Mus musculus] ref|XP_283496.3| PREDICTED: Dmx-like 1 [Mus musculus] 0.0
blast CAB01916 Hypothetical protein F54E4.1 [Caenorhabditis elegans] ref|NP_510431.1| RaB Connectin related family member (rbc-1) [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.63
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.091
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0052
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0052
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0052
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.017
Sequence
Target Sequence 
>C. ELEGANS:190832_AT
gaagccgttctttagtcagcgttgtcacaacaagtcggccactgatgttcgattccttgg
tcactctgcttcagtgctcttgactgctggatcttcatctctcgactataatctcggtct
ttgggatacacttttaccgaccaaccgtgctcttgttcattcctgggtggctcatcccga
aggagccacttgtgctctttatgttcctaaccagcagacaatcttttctggtggacgaca
cggtgaaatatgtctgtgggatattcgtcaacgacagttgcggcacacgatcaaggcgtt
tgatcagatgcatgttgtcaaaacactggccaccgattcggctcaggatctcattgtgtc
tggatcgagtgagggtgatattaagatttggtcggccgacgcgattccacagcttatgta
cagtttaccaggcgagcatacggccaaaggaggattttcattcaggcaagtgggtcaatc
aactgtacaaggtgtccaacaactatttatcgatcaaaacatgcgtcttttctcatgtgg
tgctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCGTTCTTTAGTCAGCGTTGT 328 345 8256 Antisense
AAGTCGGCCACTGATGTTCGATTCC 548 155 8287 Antisense
TGCTTCAGTGCTCTTGACTGCTGGA 348 579 8322 Antisense
GGATCTTCATCTCTCGACTATAATC 34 513 8344 Antisense
TCATCCCGAAGGAGCCACTTGTGCT 266 619 8427 Antisense
TGTGCTCTTTATGTTCCTAACCAGC 369 557 8446 Antisense
GACAATCTTTTCTGGTGGACGACAC 4 365 8472 Antisense
GACAGTTGCGGCACACGATCAAGGC 710 367 8528 Antisense
TTGTCAAAACACTGGCCACCGATTC 362 707 8570 Antisense
CGGCTCAGGATCTCATTGTGTCTGG 564 241 8594 Antisense
GCGTCTTTTCTCATGTGGTGCTGAC 665 291 8778 Antisense
Sequence Source Affymetrix Proprietary Database