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[190831_s_at] Transthyretin-like family

Description F58B3.9 /REP_DB=WormBase Gene ID /WP=CE11362 /TR=Q93809 /GB=CAA92643.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 5.8
(-3)
A 		7.9
(-2.9)
A 		7.5
(-2.9)
A 		198.3
(3)
P 		193
B 3
(-3)
A 		17
(-2.6)
A 		12.5
(-2.7)
A 		198.4
(3)
P 		195
C 7.3
(-2.9)
A 		6.2
(-2.9)
A 		1.7
(-3)
A 		234.3
(3)
P 		233
avr 5.4
(-3) 		10.4
(-2.9) 		7.2
(-2.9) 		210.3
(3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1699
1 2 3 4 5 6 range
A 426.6
(-1.2)
P 		44.2
(-2.8)
A 		10.5
(-3)
A 		6.9
(-3)
A 		133
(-2.5)
A 		1436.4
(3)
P 		1430
B 400.1
(-1.5)
P 		50
(-2.8)
A 		68
(-2.8)
A 		5.9
(-3)
A 		148.1
(-2.5)
A 		1563.3
(3)
P 		1557
C 370
(-1.7)
P 		40.5
(-2.9)
A 		6.4
(-3)
A 		12.9
(-3)
A 		157.2
(-2.5)
A 		1704.8
(3)
P 		1698
avr 398.9
(-1.5) 		44.9
(-2.9) 		28.3
(-2.9) 		8.6
(-3) 		146.1
(-2.5) 		1568.2
(3) 		1560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.1
(-2.9)
A 		1.7
(-3)
A 		2
(-2.9)
A 		29
(3)
P 		27
B 1
(-3)
A 		4.2
(-2.5)
A 		2.9
(-2.7)
A 		42.3
(3)
P 		41
C 2.4
(-2.7)
A 		1.8
(-2.8)
A 		0.6
(-3)
A 		39.5
(3)
P 		39
avr 1.8
(-3) 		2.6
(-2.9) 		1.8
(-3) 		36.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 78.6
(-1.7)
P 		15.7
(-2.8)
A 		2.3
(-3)
A 		1.7
(-3)
A 		40.1
(-2.3)
A 		349.7
(3)
P 		348
B 139.2
(-1.6)
P 		16.7
(-2.8)
A 		16.5
(-2.8)
A 		1.6
(-3)
A 		60.2
(-2.4)
A 		582.9
(3)
P 		581
C 137.1
(-1.6)
P 		12.4
(-2.9)
A 		1.6
(-3)
A 		2.6
(-3)
A 		50.9
(-2.5)
A 		570.7
(3)
P 		569
avr 118.3
(-1.6) 		14.9
(-2.8) 		6.8
(-2.9) 		2
(-3) 		50.4
(-2.4) 		501.1
(3) 		499
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190831_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8937
Sequence Type Exemplar sequence
Representative Public ID F58B3.9 NCBI
Target Description F58B3.9 /REP_DB=WormBase Gene ID /WP=CE11362 /TR=Q93809 /GB=CAA92643.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069798 NCBI Caenorhabditis elegans F58B3.9 (F58B3.9) mRNA, complete cds. 11/11 None
F58B3.9 ENSEMBL cdna:known chromosome:CEL140:IV:11640115:11640967:-1 gene:F58B3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011178 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11640276-11640973(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl F58B3.9
Entrez Gene 178092 Entrez gene
SwissProt Q93809 EMBL-EBI
WormBase CE11362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97805 Hypothetical protein F58B3.9 [Caenorhabditis elegans] emb|CAA92643.1| Hypothetical protein F58B3.9 [Caenorhabditis elegans] ref|NP_502199.1| F58B3.9 [Caenorhabditis elegans] 4.0E-73
blast CAE62082 Hypothetical protein CBG06105 [Caenorhabditis briggsae] 5.0E-68
blast CAE72285 Hypothetical protein CBG19413 [Caenorhabditis briggsae] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.5E-48
Sequence
Target Sequence 
>C. ELEGANS:190831_S_AT
tcgctgctgctcaattcggaggttatggtcgtggaagaggtggacctggtggtccaggag
gattcgaaggtggaccagccggagctggaggattccaaggaaacggagccggagagctta
cctacgaggcgaaaggaaggcttatttgtggattaactggagttgataaggttcgcgttg
ttctttgggatcgattccgtggacgtgagaacattatctacgatgaaacaaacaccgatg
ttgttggaaacttccgtcttcgtgccacacgaaatggattcgatgggaaccttattcaac
cattcctcacgatctatcacgattgcgacgatgcttcaactccaggactccgcaagatga
ctgttcaacttccaccacagtacaccaatcaaggatcactcgctttgaagtcgttcgaca
ttggaacttggaatttggagacttcatttgctggagaagaactcgagattcagaatggtg
gacttggaggacgtccaatcggtggatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGCTGCTCAATTCGGAGGTTA 611 591 47 Antisense
GAGCCGGAGAGCTTACCTACGAGGC 398 385 152 Antisense
GATAAGGTTCGCGTTGTTCTTTGGG 479 421 211 Antisense
GTTCTTTGGGATCGATTCCGTGGAC 363 439 226 Antisense
GTTGTTGGAAACTTCCGTCTTCGTG 490 433 286 Antisense
GGAACCTTATTCAACCATTCCTCAC 264 531 332 Antisense
CATTCCTCACGATCTATCACGATTG 230 217 347 Antisense
CACGATTGCGACGATGCTTCAACTC 74 201 364 Antisense
GGACTCCGCAAGATGACTGTTCAAC 294 525 391 Antisense
GGATCACTCGCTTTGAAGTCGTTCG 485 511 439 Antisense
GAGGACGTCCAATCGGTGGATCATC 267 403 533 Antisense
Sequence Source Affymetrix Proprietary Database