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[190829_s_at] citrate lyase beta chain

Description C01G10.7 /REP_DB=WormBase Gene ID /WP=CE07816 /TR=Q93167 /GB=CAB02709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=citrate lyase beta chain
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 352.2
(3)
P 		280
(-3)
P 		349.5
(2.8)
P 		297.6
(-1.5)
P 		72
B 347.3
(1.1)
P 		266.7
(-2.4)
P 		390.2
(3)
P 		253
(-3)
P 		137
C 306.7
(-0.6)
P 		376.8
(3)
P 		342.7
(1.3)
P 		259.3
(-3)
P 		118
avr 335.4
(1.3) 		307.8
(-0.5) 		360.8
(3) 		270
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 376.9
(-2.9)
P 		373.7
(-3)
P 		610.4
(2.1)
P 		652.3
(3)
P 		502.7
(-0.2)
P 		596.8
(1.8)
P 		279
B 420.7
(-2.2)
P 		378.2
(-3)
P 		628
(1.7)
P 		641.8
(2)
P 		664.6
(2.4)
P 		697.1
(3)
P 		319
C 307.6
(-3)
P 		411.2
(-1.6)
P 		552.8
(0.2)
P 		605.3
(0.9)
P 		487.8
(-0.6)
P 		767.6
(3)
P 		460
avr 368.4
(-3) 		387.7
(-2.6) 		597.1
(1.3) 		633.1
(2) 		551.7
(0.4) 		687.2
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 128.2
(3)
P 		60.8
(-1.8)
P 		91.4
(0.4)
P 		43.6
(-3)
P 		85
B 110.8
(3)
P 		65.9
(-1.7)
P 		90.4
(0.8)
P 		53.9
(-3)
P 		57
C 101.5
(1.6)
P 		108.3
(2.1)
P 		119.4
(3)
P 		43.7
(-3)
P 		76
avr 113.5
(3) 		78.3
(-0.2) 		100.4
(1.8) 		47.1
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 69.5
(-3)
P 		132.9
(1)
P 		132.9
(1)
P 		165.4
(3)
P 		151.7
(2.1)
P 		145.3
(1.7)
P 		96
B 146.4
(-2.1)
P 		125.9
(-3)
P 		152.5
(-1.9)
P 		170
(-1.2)
P 		270
(3)
P 		259.9
(2.6)
P 		144
C 114
(-3)
P 		125.5
(-2.5)
P 		140.7
(-1.9)
P 		121.7
(-2.7)
P 		157.9
(-1.2)
P 		257
(3)
P 		143
avr 110
(-3) 		128.1
(-2) 		142
(-1.3) 		152.4
(-0.7) 		193.2
(1.5) 		220.7
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190829_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13023
Sequence Type Exemplar sequence
Representative Public ID C01G10.7 NCBI
Target Description C01G10.7 /REP_DB=WormBase Gene ID /WP=CE07816 /TR=Q93167 /GB=CAB02709.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=citrate lyase beta chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074315 NCBI Caenorhabditis elegans C01G10.7 (C01G10.7) mRNA, complete cds. 11/11 None
SNAP00000004620 ENSEMBL cdna:SNAP chromosome:CEL140:V:15088337:15089413:1 11/11 None
GENEFINDER00000004630 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15088337:15089413:1 11/11 None
C01G10.7 ENSEMBL cdna:known chromosome:CEL140:V:15088337:15089650:1 gene:C01G10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15088336-15089413(+) 100.0 100.0
Public Domain and Genome References
Gene Title citrate lyase beta chain
Ensembl C01G10.7
Entrez Gene 180018 Entrez gene
SwissProt Q93167 EMBL-EBI
WormBase CE07816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02709 Hypothetical protein C01G10.7 [Caenorhabditis elegans] ref|NP_506716.1| C01G10.7 [Caenorhabditis elegans] 1.0E-172
blast CAE66319 Hypothetical protein CBG11570 [Caenorhabditis briggsae] 1.0E-164
blast XP_416971 PREDICTED: similar to citrate lyase beta like [Gallus gallus] 1.0E-66
Sequence
Target Sequence 
>C. ELEGANS:190829_S_AT
ccatctacaacatcttccgtgaacactacggagatgaacggatcacaaacacgaacactc
ggcttgttatctggatcgaatctgcacgagctcttctggatatgccacgaatagtctcat
caactctaaatcttcataaacaagccggattcttcaagctagatgcagttgtctttggat
cagacgatttctgtgcagatatcggagctacacgaagctctcacggcactgaaaccctat
tcgctcgacagaaatttgtgacttgctgtaaagcattccaacttcaagcaatcgacagtg
tctacatagatatcaaggatcttgacggtctccgtcgtcagtctgcagaagggtggcagt
ggggtttcactggaaaacaagtcattcatccaagtcaagtgtctgtggtccaggagcaat
ttctgcctccgaaggatcgaatcgaatgggctcaggagctggtccacgcttacagtgagc
acgaggcattaggaaaaggagctttccagtttagaggacaaatgatcgatcgaccacttc
tgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTACAACATCTTCCGTGAACA 8 271 398 Antisense
GAACACTCGGCTTGTTATCTGGATC 388 351 450 Antisense
CTGGATCGAATCTGCACGAGCTCTT 580 239 468 Antisense
GTCTCATCAACTCTAAATCTTCATA 233 469 511 Antisense
GAAACCCTATTCGCTCGACAGAAAT 383 357 628 Antisense
ATCAAGGATCTTGACGGTCTCCGTC 609 25 709 Antisense
TCTCCGTCGTCAGTCTGCAGAAGGG 389 609 726 Antisense
GTCCAGGAGCAATTTCTGCCTCCGA 582 477 805 Antisense
GAATGGGCTCAGGAGCTGGTCCACG 213 333 841 Antisense
CTGGTCCACGCTTACAGTGAGCACG 389 241 856 Antisense
AAATGATCGATCGACCACTTCTGCT 26 121 917 Antisense
Sequence Source Affymetrix Proprietary Database