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[190826_at] serine/threonine kinase

Description F16B12.5 /REP_DB=WormBase Gene ID /WP=CE09428 /TR=Q93521 /GB=CAB02965.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 90      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 13.1
(-2.1)
A 		6.4
(-3)
A 		15
(-1.9)
A 		52.4
(3)
A 		46
B 9.2
(-2.2)
A 		32.9
(3)
A 		5.5
(-3)
A 		32.8
(3)
A 		27
C 39.7
(-1.2)
A 		10.2
(-3)
A 		27.4
(-2)
A 		110
(3)
P 		100
avr 20.7
(-2.4) 		16.5
(-2.9) 		16
(-3) 		65.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 35.5
(2.5)
A 		10.1
(-3)
A 		37.9
(3)
A 		11.1
(-2.8)
A 		19.4
(-1)
A 		34.4
(2.2)
A 		28
B 27.7
(2)
A 		9.9
(-2.8)
A 		9
(-3)
A 		29.9
(2.5)
A 		31.6
(3)
A 		21.5
(0.3)
A 		23
C 7.6
(-2.6)
A 		43.5
(0.8)
A 		9.3
(-2.5)
A 		66.9
(3)
A 		31.2
(-0.4)
A 		3.9
(-3)
A 		63
avr 23.6
(-1.3) 		21.2
(-2.1) 		18.7
(-3) 		36
(3) 		27.4
(0) 		19.9
(-2.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.8
(0.2)
A 		1.4
(-3)
A 		3.9
(-0.6)
A 		7.7
(3)
A 		6
B 2.9
(-1.6)
A 		8.1
(3)
A 		1.3
(-3)
A 		7
(2)
A 		7
C 13.1
(0.9)
A 		2.9
(-3)
A 		9.6
(-0.4)
A 		18.5
(3)
P 		16
avr 6.9
(-0.6) 		4.1
(-3) 		4.9
(-2.3) 		11.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.5
(1)
A 		3.6
(-2.1)
A 		8.2
(2.8)
A 		2.8
(-3)
A 		5.9
(0.3)
A 		8.4
(3)
A 		6
B 9.6
(1.2)
A 		3.3
(-2.4)
A 		2.2
(-3)
A 		7.9
(0.2)
A 		12.8
(3)
A 		8
(0.3)
A 		11
C 2.8
(-2.3)
A 		13.3
(2.9)
A 		2.4
(-2.5)
A 		13.5
(3)
A 		10.1
(1.3)
A 		1.3
(-3)
A 		12
avr 6.3
(-0.7) 		6.7
(-0.3) 		4.3
(-3) 		8.1
(1.3) 		9.6
(3) 		5.9
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17573
Sequence Type Exemplar sequence
Representative Public ID F16B12.5 NCBI
Target Description F16B12.5 /REP_DB=WormBase Gene ID /WP=CE09428 /TR=Q93521 /GB=CAB02965.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077947 NCBI Caenorhabditis elegans F16B12.5 (F16B12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000024910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14099737:14101469:1 9/11 None
F16B12.5 ENSEMBL cdna:known chromosome:CEL140:X:14099598:14101375:1 gene:F16B12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024899 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14099597-14101375(+) 95.02 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl F16B12.5
Entrez Gene 184565 Entrez gene
SwissProt Q93521 EMBL-EBI
WormBase CE09428 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02965 Hypothetical protein F16B12.5 [Caenorhabditis elegans] ref|NP_510348.1| F16B12.5 [Caenorhabditis elegans] 0.0
blast CAB02965 Hypothetical protein F16B12.5 [Caenorhabditis elegans] ref|NP_510348.1| F16B12.5 [Caenorhabditis elegans] 4.0E-80
blast CAE63028 Hypothetical protein CBG07288 [Caenorhabditis briggsae] 9.0E-31
blast CAE63028 Hypothetical protein CBG07288 [Caenorhabditis briggsae] 1.0E-17
blast AAF19807 casein kinase I-like protein [Brassica oleracea] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-9
Sequence
Target Sequence 
>C. ELEGANS:190826_AT
atcagcttaatctcatcgactttggattagcagaatcgtttcttgatgatagaggaaatc
accgagaggtacataatcgccattatcgaaaaggaacttatgtttacatgagtgccaatc
agcaccatgaacaatgttttggtaagagttttttgtttgcttttgtatcagcacttctga
ttgagaattcagctttttcaaaaaaaattctattaacaataccaagacgaaaggttaaac
caaatattttttgttcgaactatctaattacaggaaatacccgaagagatgacatggagt
ccttggtttattctttgaggaaaatacttgacctcactatgtgctggaaagaaggacgga
gtgtgaacaatgatgatactcatagaaactatttcaacttgaaacaaggcaatcaaaaaa
gttgttcactttgtggaatacagccgattaacgatatgcttcaatcgtgccgcatgctcg
aattcaaagatgaacccaattatgaagcagtgaagcagctgtttgtcttggataaagcta
tgtcaaaagcgttgaaaaataaaaagcatgttccaccaaaagctacattcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCTTAATCTCATCGACTTTGG 701 27 569 Antisense
CACCGAGAGGTACATAATCGCCATT 418 199 628 Antisense
ACATGAGTGCCAATCAGCACCATGA 456 105 674 Antisense
GTTTGCTTTTGTATCAGCACTTCTG 404 451 723 Antisense
TGGAGTCCTTGGTTTATTCTTTGAG 295 549 863 Antisense
AAATACTTGACCTCACTATGTGCTG 84 117 890 Antisense
GTTCACTTTGTGGAATACAGCCGAT 397 445 992 Antisense
CGATATGCTTCAATCGTGCCGCATG 194 249 1020 Antisense
GTGCCGCATGCTCGAATTCAAAGAT 342 479 1035 Antisense
GTGAAGCAGCTGTTTGTCTTGGATA 517 481 1078 Antisense
GTTCCACCAAAAGCTACATTCGACA 244 441 1138 Antisense
Sequence Source Affymetrix Proprietary Database