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[190824_at] serine/threonine kinase

Description F16B12.7 /REP_DB=WormBase Gene ID /WP=CE09430 /TR=Q93522 /GB=CAB02966.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 11      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 15
(-2)
A 		5.2
(-2.8)
A 		3.1
(-3)
A 		73.1
(3)
A 		70
B 20.1
(-0.5)
A 		7.8
(-3)
A 		27.7
(1)
A 		37.4
(3)
A 		30
C 32.7
(0)
A 		3.5
(-3)
A 		4.5
(-2.9)
A 		61.1
(3)
M 		58
avr 22.6
(-1) 		5.5
(-3) 		11.8
(-2.3) 		57.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.7
(-2.6)
A 		15.5
(0.3)
A 		26.5
(3)
A 		4.6
(-2.4)
A 		2.1
(-3)
A 		17.1
(0.7)
A 		24
B 16.4
(1.4)
A 		20.5
(2.9)
A 		20.9
(3)
A 		3.5
(-3)
A 		15.5
(1.1)
A 		3.7
(-2.9)
A 		17
C 7.8
(-1.9)
A 		32
(3)
A 		8.1
(-1.9)
A 		13.1
(-0.8)
A 		2.5
(-3)
A 		8.8
(-1.7)
A 		30
avr 9.3
(-2) 		22.7
(3) 		18.5
(1.4) 		7.1
(-2.9) 		6.7
(-3) 		9.9
(-1.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.5
(-0.2)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		10.7
(3)
A 		10
B 6.4
(1.4)
A 		1.9
(-3)
A 		6.4
(1.4)
A 		8
(3)
A 		6
C 10.8
(3)
A 		1
(-3)
A 		1.6
(-2.6)
A 		10.3
(2.7)
M 		10
avr 7.6
(1.5) 		1.3
(-3) 		2.9
(-1.9) 		9.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		5.5
(2.7)
A 		5.8
(3)
A 		1.2
(-2.3)
A 		0.6
(-3)
A 		4.2
(1.2)
A 		5
B 5.7
(1.9)
A 		6.8
(3)
A 		5.1
(1.3)
A 		0.9
(-3)
A 		6.3
(2.5)
A 		1.4
(-2.5)
A 		6
C 2.9
(-1.6)
A 		9.8
(3)
A 		2.1
(-2.1)
A 		2.6
(-1.8)
A 		0.8
(-3)
A 		2.9
(-1.6)
A 		9
avr 3.1
(-1.4) 		7.4
(3) 		4.3
(-0.2) 		1.6
(-3) 		2.6
(-2) 		2.8
(-1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17862
Sequence Type Exemplar sequence
Representative Public ID F16B12.7 NCBI
Target Description F16B12.7 /REP_DB=WormBase Gene ID /WP=CE09430 /TR=Q93522 /GB=CAB02966.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077949(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077949 NCBI Caenorhabditis elegans F16B12.7 (F16B12.7) mRNA, complete cds. 9/11 None
SNAP00000024901 ENSEMBL cdna:SNAP chromosome:CEL140:X:14108465:14109634:1 9/11 None
GENEFINDER00000024904 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14108465:14109634:1 9/11 None
F16B12.7 ENSEMBL cdna:known chromosome:CEL140:X:14108465:14109634:1 gene:F16B12.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14108464-14109634(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl F16B12.7
Entrez Gene 184566 Entrez gene
SwissProt Q93522 EMBL-EBI
WormBase CE34174 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02966 Hypothetical protein F16B12.7 [Caenorhabditis elegans] ref|NP_510350.2| F16B12.7 [Caenorhabditis elegans] 1.0E-171
blast CAB02966 Hypothetical protein F16B12.7 [Caenorhabditis elegans] ref|NP_510350.2| F16B12.7 [Caenorhabditis elegans] 1.0E-157
blast CAB02966 Hypothetical protein F16B12.7 [Caenorhabditis elegans] ref|NP_510350.2| F16B12.7 [Caenorhabditis elegans] 1.0E-152
blast CAA94155 Hypothetical protein K08H2.5 [Caenorhabditis elegans] ref|NP_510198.1| K08H2.5 [Caenorhabditis elegans] 1.0E-30
blast CAA94155 Hypothetical protein K08H2.5 [Caenorhabditis elegans] ref|NP_510198.1| K08H2.5 [Caenorhabditis elegans] 2.0E-28
blast CAA93637 Hypothetical protein C44C10.7 [Caenorhabditis elegans] ref|NP_509953.1| C44C10.7 [Caenorhabditis elegans] 1.0E-26
blast CAA94155 Hypothetical protein K08H2.5 [Caenorhabditis elegans] ref|NP_510198.1| K08H2.5 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:190824_AT
gacagttggatgtgcagtctcccgttccttgagtactcttcactccattggctttttcca
cgctgatttgcacgaacaaaatctgatggttccgtatccgtgccgaaaaatcaatattcc
aatcaatttttgtttcaatcaacagtttaatcaaaacattaatccaataaagcttattga
tttcggattgagcaaaagattcaaaactcgaaaaaggcgtaactgcatcgataaaacgta
caaggtactacttgctgatgaacgacgttgttcattcaacatcgcttgtggcggtgatta
tcgaaaaagcgacgactttgagagcttattttatattttgcttatcgatctaggattaag
ctgctaccgggaaaacaaagcacagagatttctgactaagcttaaattgcactttgccac
tgaaacatttctccaaaacttgccatggatgactattgtattcaaatcgatgcgtgcaca
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTTGGATGTGCAGTCTCCCGT 217 369 369 Antisense
CTTGAGTACTCTTCACTCCATTGGC 549 217 396 Antisense
CTTTTTCCACGCTGATTTGCACGAA 313 223 420 Antisense
AAATCTGATGGTTCCGTATCCGTGC 600 115 447 Antisense
GTTCCGTATCCGTGCCGAAAAATCA 649 301 457 Antisense
GTACTACTTGCTGATGAACGACGTT 559 457 613 Antisense
GTTCATTCAACATCGCTTGTGGCGG 532 443 638 Antisense
CGATCTAGGATTAAGCTGCTACCGG 666 247 714 Antisense
AGCTTAAATTGCACTTTGCCACTGA 585 77 767 Antisense
AACATTTCTCCAAAACTTGCCATGG 210 137 792 Antisense
GTATTCAAATCGATGCGTGCACAGA 395 453 826 Antisense
Sequence Source Affymetrix Proprietary Database