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[190823_at] reverse transcriptase

Description Y51B11A.1 /REP_DB=WormBase Gene ID /WP=CE22326 /TR=Q9N4S7 /GB=AAF60743.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 54      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 39.9
(2.6)
A 		18.4
(-1)
A 		42.1
(3)
A 		6.4
(-3)
A 		36
B 1.4
(-3)
A 		13
(0.4)
A 		3.2
(-2.5)
A 		21.8
(3)
A 		20
C 1.3
(-3)
A 		59.7
(3)
A 		1.8
(-2.9)
A 		54.4
(2.5)
A 		58
avr 14.2
(-3) 		30.4
(3) 		15.7
(-2.4) 		27.5
(1.9) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.1
(1.3)
A 		9.1
(-0.7)
A 		15.4
(2.5)
A 		4.6
(-3)
A 		6.5
(-2)
A 		16.4
(3)
A 		12
B 6.3
(-2.5)
A 		16.3
(-0.9)
A 		42.3
(3)
A 		27.4
(0.7)
A 		11.9
(-1.6)
A 		2.8
(-3)
A 		40
C 3.3
(-3)
A 		46.7
(3)
A 		23.1
(-0.3)
A 		15.2
(-1.4)
A 		3.3
(-3)
A 		27.2
(0.3)
A 		43
avr 7.6
(-2.9) 		24
(2.1) 		26.9
(3) 		15.7
(-0.4) 		7.2
(-3) 		15.5
(-0.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.5
(3)
A 		4
(-1.6)
A 		11
(1.5)
A 		0.9
(-3)
A 		14
B 0.4
(-3)
A 		3.2
(0.9)
A 		0.7
(-2.6)
A 		4.7
(3)
A 		4
C 0.4
(-3)
A 		17.2
(3)
A 		0.6
(-2.9)
A 		9.2
(0.1)
A 		17
avr 5.1
(-1.5) 		8.1
(3) 		4.1
(-3) 		4.9
(-1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.4
(-0.4)
A 		3.3
(1.5)
A 		3.4
(1.7)
A 		1.2
(-3)
A 		1.9
(-1.5)
A 		4
(3)
A 		3
B 2.2
(-2.2)
A 		5.4
(-0.2)
A 		10.3
(3)
A 		7.2
(1)
A 		4.8
(-0.5)
A 		1
(-3)
A 		9
C 1.2
(-3)
A 		14.2
(3)
A 		5.9
(-0.8)
A 		3.1
(-2.1)
A 		1.1
(-3)
A 		9.1
(0.7)
A 		13
avr 1.9
(-3) 		7.6
(3) 		6.5
(1.8) 		3.8
(-1) 		2.6
(-2.3) 		4.7
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12083
Sequence Type Exemplar sequence
Representative Public ID Y51B11A.1 NCBI
Target Description Y51B11A.1 /REP_DB=WormBase Gene ID /WP=CE22326 /TR=Q9N4S7 /GB=AAF60743.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072749 NCBI Caenorhabditis elegans Y51B11A.1 (Y51B11A.1) mRNA, complete cds. 11/11 None
SNAP00000037992 ENSEMBL cdna:SNAP chromosome:CEL140:V:8330202:8333588:-1 11/11 None
GENEFINDER00000037993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8328868:8333588:-1 11/11 None
Y51B11A.1 ENSEMBL cdna:known chromosome:CEL140:V:8330202:8333588:-1 gene:Y51B11A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8330202-8333589(-) 100.0 100.0
Public Domain and Genome References
Gene Title reverse transcriptase
Ensembl Y51B11A.1
Entrez Gene 190143 Entrez gene
SwissProt Q9N4S7 EMBL-EBI
WormBase CE22326 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638419_AT Salivary gland secretion 1 dm
DROSGENOME1:143345_AT Salivary gland secretion 1 dm
Protein Similarities
Method ID Description E-Value
blast AAF60743 Hypothetical protein Y51B11A.1 [Caenorhabditis elegans] ref|NP_505150.1| Y51B11A.1 [Caenorhabditis elegans] 1.0E-68
blast AAF60743 Hypothetical protein Y51B11A.1 [Caenorhabditis elegans] ref|NP_505150.1| Y51B11A.1 [Caenorhabditis elegans] 8.0E-66
blast NP_505149 W02D7.9 [Caenorhabditis elegans] gb|AAB63938.1| Hypothetical protein W02D7.9 [Caenorhabditis elegans] 6.0E-26
blast CAB03859 Hypothetical protein C08E8.3 [Caenorhabditis elegans] ref|NP_507589.1| C08E8.3 [Caenorhabditis elegans] 9.0E-11
blast CAB03859 Hypothetical protein C08E8.3 [Caenorhabditis elegans] ref|NP_507589.1| C08E8.3 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:190823_AT
ctactactaccacagtaccatgtgattgttctctctcctacatcgatcgagttgtatacc
cattcacaactgaatggtgggaaaacaagagagatattataattcagtcatatgattcac
caagaagaactgccttttctttcgttagtacattcgatattggaacctgtacggcaattt
tgacatgtatttatacatccgaaggaggaatatccaatttaaatgctacgttattcattg
gtctatctgatggatcgagtattgatctaccgttctataatgtaccaactggacttgaaa
tttggcctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTACTACCACAGTACCATGTGA 276 227 2858 Antisense
CAGTACCATGTGATTGTTCTCTCTC 580 207 2870 Antisense
TCTCTCTCCTACATCGATCGAGTTG 192 613 2887 Antisense
TCGATCGAGTTGTATACCCATTCAC 306 603 2900 Antisense
ATTCACCAAGAAGAACTGCCTTTTC 112 13 2972 Antisense
CTGCCTTTTCTTTCGTTAGTACATT 570 235 2987 Antisense
GGAACCTGTACGGCAATTTTGACAT 686 529 3019 Antisense
GCTACGTTATTCATTGGTCTATCTG 383 303 3082 Antisense
GGTCTATCTGATGGATCGAGTATTG 319 503 3097 Antisense
GATCTACCGTTCTATAATGTACCAA 400 419 3121 Antisense
ACTGGACTTGAAATTTGGCCTGAAA 421 95 3145 Antisense
Sequence Source Affymetrix Proprietary Database