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[190822_s_at] membrane glycoprotein

Description R07B1.3 /REP_DB=WormBase Gene ID /WP=CE01629 /TR=SW:Q09606 /GB=CAA88547.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 45      6grp_total > 30      4grp_total > 50      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 256
(-1.7)
P 		725.2
(3)
P 		506.5
(0.8)
P 		120
(-3)
A 		605
B 190
(-1.4)
P 		566.8
(3)
P 		471.5
(1.9)
P 		53.1
(-3)
A 		514
C 208.5
(-1.4)
P 		463
(2.6)
P 		489.2
(3)
P 		108.5
(-3)
P 		381
avr 218.2
(-1.5) 		585
(3) 		489.1
(1.8) 		93.9
(-3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 168.3
(-1.1)
P 		227.4
(0.6)
P 		298.1
(2.6)
P 		313.3
(3)
P 		174.6
(-0.9)
P 		102
(-3)
A 		211
B 124.8
(-1.7)
P 		242.1
(2)
P 		220.1
(1.3)
P 		273.2
(3)
P 		267.3
(2.8)
P 		84.2
(-3)
P 		189
C 134.5
(-1.4)
P 		359.5
(3)
P 		320.3
(2.2)
P 		219.1
(0.3)
P 		142.2
(-1.2)
P 		51.4
(-3)
A 		308
avr 142.5
(-1.1) 		276.3
(2.9) 		279.5
(3) 		268.5
(2.7) 		194.7
(0.5) 		79.2
(-3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 93.2
(0.2)
P 		157.4
(3)
P 		132.4
(1.9)
P 		17.6
(-3)
A 		140
B 60.6
(-0.7)
P 		140
(3)
P 		109.3
(1.6)
P 		11.3
(-3)
A 		129
C 69
(-1)
P 		133.1
(1.5)
P 		170.5
(3)
P 		18.3
(-3)
P 		152
avr 74.3
(-0.2) 		143.5
(3) 		137.4
(2.7) 		15.7
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 31
(-2.3)
P 		80.9
(3)
P 		64.9
(1.3)
P 		79.5
(2.9)
P 		52.7
(-0)
P 		24.8
(-3)
A 		56
B 43.4
(-2.1)
P 		80.6
(0.8)
P 		53.5
(-1.3)
P 		72.4
(0.2)
P 		108.6
(3)
P 		31.4
(-3)
P 		77
C 49.9
(-0.9)
P 		109.7
(3)
P 		81.5
(1.2)
P 		44.1
(-1.3)
P 		46
(-1.1)
P 		17.2
(-3)
A 		93
avr 41.4
(-1.5) 		90.4
(3) 		66.6
(0.8) 		65.3
(0.7) 		69.1
(1.1) 		24.5
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190822_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16924
Sequence Type Exemplar sequence
Representative Public ID R07B1.3 NCBI
Target Description R07B1.3 /REP_DB=WormBase Gene ID /WP=CE01629 /TR=SW:Q09606 /GB=CAA88547.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=membrane glycoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077250 NCBI Caenorhabditis elegans R07B1.3 (R07B1.3) mRNA, complete cds. 11/11 A 
R07B1.3 ENSEMBL cdna:known chromosome:CEL140:X:9858296:9861666:1 gene:R07B1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020709 4/11 Cross Hyb Matching Probes None
SNAP00000020689 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9858323-9861580(+) 100.0 100.0
Public Domain and Genome References
Gene Title membrane glycoprotein
Ensembl R07B1.3
Entrez Gene 181200 Entrez gene
SwissProt Q09606 EMBL-EBI
WormBase CE01629 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88547 Hypothetical protein R07B1.3 [Caenorhabditis elegans] ref|NP_509651.1| R07B1.3 [Caenorhabditis elegans] sp|Q09606|YRN3_CAEEL Hypothetical protein R07B1.3 in chromosome X 0.0
blast CAE58722 Hypothetical protein CBG01907 [Caenorhabditis briggsae] 0.0
blast CAA96619 Hypothetical protein F07A5.3 [Caenorhabditis elegans] ref|NP_492081.1| F07A5.3 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR002159 EMBL-EBI CD36 antigen 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509651.1 2 7-29,503-525
R07B1.3 2 7-29,503-525
Sequence
Target Sequence 
>C. ELEGANS:190822_S_AT
caagaaaaaacctctggcaccgctttgcaagtcgacgttagattccaagtgaacttaccg
gttgtgaacaacaaaggatcaataatgtcatcacaaatgcccaatgtgatcattccgttg
ttttatgaggactcacatgctctggtcaaagactttgtaatggacactgtttggctcgga
gttatcattgttcccaggattattgaatatttgaaatttgtattgagttttatatccatt
tgcatactgacaacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAAAAAACCTCTGGCACCGCTT 101 153 1321 Antisense
CACCGCTTTGCAAGTCGACGTTAGA 655 199 1338 Antisense
GTCGACGTTAGATTCCAAGTGAACT 79 475 1351 Antisense
GTGAACTTACCGGTTGTGAACAACA 481 479 1369 Antisense
TAATGTCATCACAAATGCCCAATGT 458 635 1403 Antisense
TGCCCAATGTGATCATTCCGTTGTT 21 585 1418 Antisense
TTCCGTTGTTTTATGAGGACTCACA 692 697 1433 Antisense
GGACTCACATGCTCTGGTCAAAGAC 366 525 1449 Antisense
AATGGACACTGTTTGGCTCGGAGTT 59 163 1479 Antisense
GGAGTTATCATTGTTCCCAGGATTA 18 519 1498 Antisense
TATCCATTTGCATACTGACAACACT 201 657 1553 Antisense
Sequence Source Affymetrix Proprietary Database