[Home] | [Total List]

[190819_s_at] acyl-CoA dehydrogenase

Description T25G12.5 /REP_DB=WormBase Gene ID /WP=CE18284 /TR=Q22781 /GB=AAC69025.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 58      6grp_total > 38      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1930
1 2 3 4 range
A 3176.8
(-3)
P 		4541.6
(1.2)
P 		4301.6
(0.5)
P 		5107.1
(3)
P 		1930
B 3386.9
(-3)
P 		4058.9
(-0.5)
P 		4974.2
(3)
P 		4668
(1.8)
P 		1587
C 3981
(1.2)
P 		3472.3
(-3)
P 		3864.2
(0.2)
P 		4198
(3)
P 		726
avr 3514.9
(-3) 		4024.3
(-0.3) 		4380
(1.5) 		4657.7
(3) 		1143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2546
1 2 3 4 5 6 range
A 4107.9
(3)
P 		1865.8
(-3)
P 		2280
(-1.9)
P 		2006.9
(-2.6)
P 		2442.9
(-1.5)
P 		3816.9
(2.2)
P 		2242
B 4272.2
(3)
P 		1884.8
(-3)
P 		3107.5
(0.1)
P 		2602.2
(-1.2)
P 		2397.8
(-1.7)
P 		3448.9
(0.9)
P 		2387
C 4184
(3)
P 		1726.2
(-3)
P 		2221.5
(-1.8)
P 		2020.9
(-2.3)
P 		2708
(-0.6)
P 		3007.5
(0.1)
P 		2458
avr 4188
(3) 		1825.6
(-3) 		2536.3
(-1.2) 		2210
(-2) 		2516.2
(-1.2) 		3424.4
(1.1) 		2362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 1156.7
(3)
P 		985.9
(0.5)
P 		1124.5
(2.5)
P 		747.6
(-3)
P 		409
B 1080.1
(0.2)
P 		1002.5
(-2.7)
P 		1152.6
(3)
P 		994.8
(-3)
P 		158
C 1317.8
(2.7)
P 		998.3
(-0.3)
P 		1346.8
(3)
P 		707.9
(-3)
P 		639
avr 1184.9
(2.6) 		995.6
(-0.3) 		1208
(3) 		816.8
(-3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1144
1 2 3 4 5 6 range
A 757.3
(0.6)
P 		663.6
(-0.7)
P 		496.5
(-3)
P 		509
(-2.8)
P 		737.1
(0.3)
P 		929.3
(3)
P 		433
B 1486.5
(3)
P 		627.4
(-3)
P 		754.6
(-2.1)
P 		689.2
(-2.6)
P 		974.2
(-0.6)
P 		1286.1
(1.6)
P 		859
C 1550.8
(3)
P 		526.7
(-2.4)
P 		565.4
(-2.2)
P 		406.4
(-3)
P 		876.3
(-0.5)
P 		1006.8
(0.1)
P 		1144
avr 1264.9
(3) 		605.9
(-2.4) 		605.5
(-2.4) 		534.9
(-3) 		862.5
(-0.3) 		1074.1
(1.4) 		730
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17317
Sequence Type Exemplar sequence
Representative Public ID T25G12.5 NCBI
Target Description T25G12.5 /REP_DB=WormBase Gene ID /WP=CE18284 /TR=Q22781 /GB=AAC69025.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078388 NCBI Caenorhabditis elegans T25G12.5 (T25G12.5) mRNA, complete cds. 11/11 A 
SNAP00000027868 ENSEMBL cdna:SNAP chromosome:CEL140:X:17215032:17216957:-1 11/11 None
GENEFINDER00000027885 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17215032:17217564:-1 11/11 None
T25G12.5.1 ENSEMBL cdna:known chromosome:CEL140:X:17214930:17217019:-1 gene:T25G12.5 11/11 None
T25G12.5.2 ENSEMBL cdna:known chromosome:CEL140:X:17214941:17217017:-1 gene:T25G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17215031-17217014(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-CoA dehydrogenase
Ensembl T25G12.5
Entrez Gene 181758 Entrez gene
SwissProt Q22781 EMBL-EBI
WormBase CE18284 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69025 Hypothetical protein T25G12.5 [Caenorhabditis elegans] ref|NP_510789.1| T25G12.5 [Caenorhabditis elegans] 0.0
blast CAE69690 Hypothetical protein CBG15945 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-152
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-157
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 2.6E-70
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 6.1E-61
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.3E-24
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 2.6E-70
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 6.1E-61
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.3E-24
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 2.6E-70
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 6.1E-61
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.3E-24
Sequence
Target Sequence 
>C. ELEGANS:190819_S_AT
gttgaaggggacaccccaggactcaccagaggacgcaaggagatcaacatgggacaacga
tgttcagacacccgtggtattaccttcgaagacgtccgtgttccagccgccaacgtcgtc
ggagccccaggagagggattcaaggtcgccatgaagacattcgacaaaacccggccaact
gttgcagcacttgccaccggagttgcttaccgctgcttggacgtcgccacacagtattct
ctggagagaaaagcgtttggaacgcaaattgccaaccatcaaggagtgtcgttcttgctt
gccgagatggccatcaattgtgagctcgctagattgatgacctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAAGGGGACACCCCAGGACTCA 319 197 643 Antisense
CCAGGACTCACCAGAGGACGCAAGG 234 271 658 Antisense
GGGACAACGATGTTCAGACACCCGT 270 493 693 Antisense
TCAGACACCCGTGGTATTACCTTCG 681 623 706 Antisense
TATTACCTTCGAAGACGTCCGTGTT 616 663 720 Antisense
GAAGACATTCGACAAAACCCGGCCA 394 159 795 Antisense
GAACGCAAATTGCCAACCATCAAGG 3 347 902 Antisense
CAAGGAGTGTCGTTCTTGCTTGCCG 634 183 922 Antisense
TCTTGCTTGCCGAGATGGCCATCAA 349 617 935 Antisense
TGGCCATCAATTGTGAGCTCGCTAG 291 545 950 Antisense
GAGCTCGCTAGATTGATGACCTACA 488 387 964 Antisense
Sequence Source Affymetrix Proprietary Database