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[190818_at] serine/threonine kinase

Description F32B6.10 /REP_DB=WormBase Gene ID /WP=CE20743 /TR=Q9XVP6 /GB=CAB03045.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 85      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 24.5
(3)
A 		2.6
(-3)
A 		5.5
(-2.2)
A 		5.5
(-2.2)
A 		22
B 2.7
(3)
A 		2.3
(1.5)
A 		1.1
(-3)
A 		2.4
(1.9)
A 		2
C 12.6
(-1.1)
A 		12
(-1.2)
A 		1.3
(-3)
A 		37.7
(3)
A 		36
avr 13.3
(2.1) 		5.6
(-1.6) 		2.6
(-3) 		15.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 32
(1.8)
A 		10.7
(-1.8)
A 		3.2
(-3)
A 		11.3
(-1.7)
A 		25.4
(0.7)
A 		39.5
(3)
A 		36
B 1.3
(-2.9)
A 		15
(-0.7)
A 		0.7
(-3)
A 		7.3
(-1.9)
A 		11.3
(-1.3)
A 		38.2
(3)
A 		38
C 2.8
(-3)
A 		6.5
(-2.6)
A 		25.4
(-0.6)
A 		58.9
(3)
A 		17
(-1.5)
A 		29.3
(-0.2)
M 		56
avr 12
(-2.5) 		10.7
(-2.8) 		9.8
(-3) 		25.8
(0.7) 		17.9
(-1.1) 		35.7
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.9
(3)
A 		0.6
(-3)
A 		1.4
(-2.4)
A 		0.8
(-2.9)
A 		8
B 0.9
(3)
A 		0.6
(-0)
A 		0.3
(-3)
A 		0.5
(-1)
A 		1
C 4.2
(0.8)
A 		3.5
(0.1)
A 		0.5
(-3)
A 		6.4
(3)
A 		6
avr 4.7
(3) 		1.6
(-1.7) 		0.7
(-3) 		2.6
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.9
(0.5)
A 		3.8
(-0.9)
A 		0.7
(-3)
A 		2.9
(-1.5)
A 		7.7
(1.7)
A 		9.6
(3)
A 		9
B 0.5
(-2.9)
A 		5
(-1)
A 		0.2
(-3)
A 		1.9
(-2.3)
A 		4.6
(-1.1)
A 		14.3
(3)
A 		14
C 1
(-3)
A 		2
(-2.4)
A 		6.5
(0.1)
A 		11.8
(3)
A 		5.5
(-0.5)
A 		9.8
(1.9)
M 		11
avr 2.5
(-3) 		3.6
(-2.2) 		2.5
(-3) 		5.5
(-0.9) 		5.9
(-0.7) 		11.2
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9422
Sequence Type Exemplar sequence
Representative Public ID F32B6.10 NCBI
Target Description F32B6.10 /REP_DB=WormBase Gene ID /WP=CE20743 /TR=Q9XVP6 /GB=CAB03045.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069377 NCBI Caenorhabditis elegans F32B6.10 (F32B6.10) mRNA, complete cds. 11/11 None
SNAP00000041530 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9887162:9889901:-1 11/11 None
GENEFINDER00000041544 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9887162:9891978:-1 11/11 None
F32B6.10 ENSEMBL cdna:known chromosome:CEL140:IV:9887162:9890031:-1 gene:F32B6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9887167-9890037(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl F32B6.10
Entrez Gene 185199 Entrez gene
SwissProt Q9XVP6 EMBL-EBI
WormBase CE20743 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03045 Hypothetical protein F32B6.10 [Caenorhabditis elegans] ref|NP_501778.1| F32B6.10 [Caenorhabditis elegans] 0.0
blast CAB03040 Hypothetical protein F32B6.4 [Caenorhabditis elegans] ref|NP_501779.1| F32B6.4 [Caenorhabditis elegans] 1.0E-95
blast CAE59971 Hypothetical protein CBG03462 [Caenorhabditis briggsae] 2.0E-71
blast CAE59971 Hypothetical protein CBG03462 [Caenorhabditis briggsae] 3.0E-71
blast CAE59971 Hypothetical protein CBG03462 [Caenorhabditis briggsae] 5.0E-65
blast CAE71718 Hypothetical protein CBG18695 [Caenorhabditis briggsae] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0031
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-11
Pfam IPR000719 EMBL-EBI Protein kinase 0.0031
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-11
Pfam IPR000719 EMBL-EBI Protein kinase 0.0031
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-11
Sequence
Target Sequence 
>C. ELEGANS:190818_AT
gatacaccgacttcaaagtacacatttgaagaggtggaactttctgaagatgatcttgaa
gaacgattcacaggagaatgggaagaagtgactggagaatttttcgcgattgatgaagtt
aaaatcaataatccggaaaaatgttcaaagctggccagtgaatggaaaaatcctgacgtt
gatgtgttccaatctgcaagcaaaaatcaaaaaggcagtaaaatgatgttgagctatgaa
tttagacttactggaaaaaatgaagaacagactggaaaaaatgaagaaaaaatgaacgaa
tatgcatatcgttgggaaaaagcaagagaaagatacagacaaaggatgttacgattgaag
cttaatgatcgcaacaagcagcaatttgaagctaagaactacatggaacaacaaatagag
aatgatagaagagatcgtttagatgatattgagaatgtcgctctgaagtatttgacgact
gaaggtgccaacagtgatgaaaaggatgcggaagtgaatatgtctgagcttcataaggac
aggaatgatgtattgagagatgcccagaaattgatccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACACCGACTTCAAAGTACACAT 524 423 1021 Antisense
GAGGTGGAACTTTCTGAAGATGATC 4 403 1051 Antisense
GTGACTGGAGAATTTTTCGCGATTG 637 481 1108 Antisense
AAATGTTCAAAGCTGGCCAGTGAAT 49 121 1159 Antisense
AAAATCCTGACGTTGATGTGTTCCA 506 133 1187 Antisense
GATGTGTTCCAATCTGCAAGCAAAA 216 409 1201 Antisense
TAATGATCGCAACAAGCAGCAATTT 382 635 1383 Antisense
GAGAATGTCGCTCTGAAGTATTTGA 459 391 1471 Antisense
GTATTTGACGACTGAAGGTGCCAAC 632 451 1488 Antisense
GATGCGGAAGTGAATATGTCTGAGC 158 415 1525 Antisense
GAGAGATGCCCAGAAATTGATCCGT 334 395 1575 Antisense
Sequence Source Affymetrix Proprietary Database