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[190815_s_at] serine carboxypeptidase

Description K10C2.1 /REP_DB=WormBase Gene ID /WP=CE04747 /TR=Q94269 /GB=AAK39256.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 05      6grp_total > 15      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12935
1 2 3 4 range
A 13995.4
(3)
P 		11845.1
(2)
P 		10667.9
(1.4)
P 		1180.7
(-3)
P 		12815
B 12772.3
(3)
P 		10079.9
(1.6)
P 		10556.9
(1.8)
P 		1345.6
(-3)
P 		11427
C 11960.8
(3)
P 		9337.9
(1.6)
P 		9763.8
(1.8)
P 		1060.2
(-3)
P 		10901
avr 12909.5
(3) 		10421
(1.7) 		10329.5
(1.7) 		1195.5
(-3) 		11714

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8079
1 2 3 4 5 6 range
A 11527.3
(3)
P 		9547.9
(1.3)
P 		4508.9
(-3)
P 		4944
(-2.6)
P 		4832.4
(-2.7)
P 		4654.2
(-2.9)
P 		7018
B 10225.4
(3)
P 		7800.8
(0.9)
P 		6071.2
(-0.7)
P 		4683.6
(-1.9)
P 		3542.2
(-2.9)
P 		3448.3
(-3)
P 		6777
C 10425.3
(3)
P 		7346.4
(0.3)
P 		7485.7
(0.4)
P 		3968.6
(-2.7)
P 		5801.2
(-1)
P 		3572.3
(-3)
P 		6853
avr 10726
(3) 		8231.7
(0.8) 		6021.9
(-1.1) 		4532.1
(-2.4) 		4725.3
(-2.3) 		3891.6
(-3) 		6834
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4923
1 2 3 4 range
A 5095.7
(3)
P 		2571.2
(-0.1)
P 		2788.8
(0.2)
P 		172.8
(-3)
P 		4923
B 4073
(3)
P 		2489.5
(0.5)
P 		2446.3
(0.4)
P 		286.8
(-3)
P 		3786
C 3959.4
(3)
P 		2684.7
(1)
P 		3403
(2.1)
P 		178.8
(-3)
P 		3781
avr 4376
(3) 		2581.8
(0.4) 		2879.4
(0.8) 		212.8
(-3) 		4163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3066
1 2 3 4 5 6 range
A 2125
(-0.2)
P 		3395.7
(3)
P 		982
(-3)
P 		1253.9
(-2.3)
P 		1458.2
(-1.8)
P 		1133.2
(-2.6)
P 		2414
B 3557.9
(3)
P 		2596.6
(0.5)
P 		1474.3
(-2.4)
P 		1240.5
(-3)
P 		1439.2
(-2.5)
P 		1285.8
(-2.9)
P 		2317
C 3864.2
(3)
P 		2241.6
(-0.2)
P 		1905.2
(-0.8)
P 		798.1
(-3)
P 		1877.2
(-0.9)
P 		1195.9
(-2.2)
P 		3066
avr 3182.4
(3) 		2744.6
(1.7) 		1453.8
(-2) 		1097.5
(-3) 		1591.5
(-1.6) 		1205
(-2.7) 		2085
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16171
Sequence Type Exemplar sequence
Representative Public ID K10C2.1 NCBI
Target Description K10C2.1 /REP_DB=WormBase Gene ID /WP=CE04747 /TR=Q94269 /GB=AAK39256.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076678 NCBI Caenorhabditis elegans K10C2.1 (K10C2.1) mRNA, complete cds. 11/11 None
SNAP00000032616 ENSEMBL cdna:SNAP chromosome:CEL140:X:6420064:6430473:-1 10/11 None
GENEFINDER00000032625 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6420064:6430473:-1 11/11 None
K10C2.1 ENSEMBL cdna:known chromosome:CEL140:X:6420989:6430463:-1 gene:K10C2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6421083-6430428(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl K10C2.1
Entrez Gene 180915 Entrez gene
SwissProt Q94269 EMBL-EBI
WormBase CE37128 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16486_AT serine carboxypeptidase III, putative at
ATH1-121501:258970_AT serine carboxypeptidase III, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39256 Hypothetical protein K10C2.1 [Caenorhabditis elegans] ref|NP_509079.2| K10C2.1 [Caenorhabditis elegans] 0.0
blast CAE61256 Hypothetical protein CBG05062 [Caenorhabditis briggsae] 0.0
blast CAE63228 Hypothetical protein CBG07588 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR000626 EMBL-EBI Ubiquitin 4.2E-7
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032625 2 15-37,71-88
Sequence
Target Sequence 
>C. ELEGANS:190815_S_AT
gacacatgtcaccaactgatcgtccaggaccagttcttcaaatgatgaacaactttgtcc
atgggcaaggaaactataacacatcaattgctgttagtatggtgcgccagccacttcttg
cccaattccttgaacaaggaattggaccagttggaacaagtgctccagttgcttcaacca
gcacaacaaatacgccaagcccaaccaatcagtcaccagtaactcaagcaccaccagtaa
ctctaccacctccttcagtagcaacagcaggacctactgggcctatcttaaccgttgtgc
cagtttcatctgctccaacatcaggtgctgtctcctcaacaacaaatacgccaagcccaa
ccaatcagtcaccagtaactctaccacctccttcagtagcaacagcaggacctactgggc
ctatcttaaccgttgtgccagtttcatctgctccaacatcaggtgctgtctcctcaactg
caactgctgcaccagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACATGTCACCAACTGATCGTCC 369 367 6452 Antisense
ATCGTCCAGGACCAGTTCTTCAAAT 696 33 6470 Antisense
CTCCAGTTGCTTCAACCAGCACAAC 650 235 6614 Antisense
AGTAACTCAAGCACCACCAGTAACT 559 59 6669 Antisense
AGCAACAGCAGGACCTACTGGGCCT 268 75 6711 Antisense
CTACTGGGCCTATCTTAACCGTTGT 134 227 6725 Antisense
TAACCGTTGTGCCAGTTTCATCTGC 653 637 6740 Antisense
AATCAGTCACCAGTAACTCTACCAC 144 169 6814 Antisense
TAGCAACAGCAGGACCTACTGGGCC 230 647 6848 Antisense
TGGGCCTATCTTAACCGTTGTGCCA 149 553 6867 Antisense
CTCAACTGCAACTGCTGCACCAGTA 630 227 6924 Antisense
Sequence Source Affymetrix Proprietary Database