[Home] | [Total List]

[190808_at] Protein kinase domain

Description ZK507.3 /REP_DB=WormBase Gene ID /WP=CE24728 /TR=SW:P34635 /GB=CAA82368.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase domain
Cluster 4grp_high_8_8 > 20      6grp_total > 77      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 6.6
(-3)
A 		49
(3)
P 		19.9
(-1.1)
A 		38.5
(1.5)
A 		42
B 42.2
(3)
P 		24.2
(-3)
A 		35.2
(0.7)
P 		33.8
(0.2)
A 		18
C 12.5
(-3)
A 		14
(-2.9)
A 		17.2
(-2.6)
P 		91.4
(3)
P 		79
avr 20.4
(-3) 		29.1
(-1.5) 		24.1
(-2.4) 		54.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 15.3
(-3)
A 		31.2
(-2)
A 		22.4
(-2.5)
A 		54.9
(-0.5)
P 		63.1
(0)
P 		109.9
(3)
P 		95
B 22
(-2.7)
M 		14.5
(-3)
A 		22.1
(-2.7)
A 		23.8
(-2.6)
P 		54.8
(-1.2)
P 		149.5
(3)
P 		135
C 13
(-2.7)
A 		17.3
(-2.5)
A 		3.9
(-3)
A 		40.1
(-1.7)
A 		47.9
(-1.5)
P 		176.7
(3)
P 		173
avr 16.8
(-3) 		21
(-2.8) 		16.1
(-3) 		39.6
(-1.9) 		55.3
(-1.2) 		145.4
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-3)
A 		10.6
(3)
P 		5.2
(-1)
A 		5.6
(-0.7)
A 		8
B 13.5
(3)
P 		6
(-3)
A 		8.2
(-1.2)
P 		7.2
(-2)
A 		8
C 4.1
(-2.9)
A 		4
(-3)
A 		6
(-1.9)
P 		15.4
(3)
P 		11
avr 6.7
(-2.6) 		6.9
(-2.2) 		6.5
(-3) 		9.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 2.8
(-3)
A 		11.1
(-0.9)
A 		4.9
(-2.5)
A 		13.9
(-0.2)
P 		19.1
(1.1)
P 		26.8
(3)
P 		24
B 7.6
(-2.7)
M 		4.8
(-3)
A 		5.4
(-2.9)
A 		6.3
(-2.8)
P 		22.3
(-0.9)
P 		55.7
(3)
P 		51
C 4.8
(-2.6)
A 		5.3
(-2.6)
A 		1
(-3)
A 		8.1
(-2.3)
A 		15.5
(-1.5)
P 		59.1
(3)
P 		58
avr 5.1
(-2.8) 		7.1
(-2.5) 		3.8
(-3) 		9.4
(-2.2) 		19
(-0.9) 		47.2
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6684
Sequence Type Exemplar sequence
Representative Public ID ZK507.3 NCBI
Target Description ZK507.3 /REP_DB=WormBase Gene ID /WP=CE24728 /TR=SW:P34635 /GB=CAA82368.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066615 NCBI Caenorhabditis elegans ZK507.3 (ZK507.3) mRNA, complete cds. 11/11 A 
SNAP00000005917 ENSEMBL cdna:SNAP chromosome:CEL140:III:9101273:9103001:1 11/11 None
GENEFINDER00000005931 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9101273:9103001:1 11/11 None
ZK507.3 ENSEMBL cdna:known chromosome:CEL140:III:9101273:9103001:1 gene:ZK507.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9101268-9102997(+) 100.0 100.0
Public Domain and Genome References
Gene Title Protein kinase domain
Ensembl ZK507.3
Entrez Gene 191337 Entrez gene
SwissProt P34635 EMBL-EBI
WormBase CE34146 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82368 Hypothetical protein ZK507.3 [Caenorhabditis elegans] ref|NP_499016.2| ZK507.3 [Caenorhabditis elegans] sp|P34635|YOO3_CAEEL Putative serine/threonine-protein kinase ZK507.3 0.0
blast CAA82368 Hypothetical protein ZK507.3 [Caenorhabditis elegans] ref|NP_499016.2| ZK507.3 [Caenorhabditis elegans] sp|P34635|YOO3_CAEEL Putative serine/threonine-protein kinase ZK507.3 1.0E-161
blast CAA82368 Hypothetical protein ZK507.3 [Caenorhabditis elegans] ref|NP_499016.2| ZK507.3 [Caenorhabditis elegans] sp|P34635|YOO3_CAEEL Putative serine/threonine-protein kinase ZK507.3 1.0E-153
blast CAA82367 Hypothetical protein ZK507.1 [Caenorhabditis elegans] ref|NP_499015.1| ZK507.1 [Caenorhabditis elegans] sp|P34633|YOO1_CAEEL Putative serine/threonine-protein kinase ZK507.1 1.0E-148
blast CAA82367 Hypothetical protein ZK507.1 [Caenorhabditis elegans] ref|NP_499015.1| ZK507.1 [Caenorhabditis elegans] sp|P34633|YOO1_CAEEL Putative serine/threonine-protein kinase ZK507.1 1.0E-131
blast CAA82367 Hypothetical protein ZK507.1 [Caenorhabditis elegans] ref|NP_499015.1| ZK507.1 [Caenorhabditis elegans] sp|P34633|YOO1_CAEEL Putative serine/threonine-protein kinase ZK507.1 1.0E-124
blast S40735 protein kinase homolog ZK507.1 - Caenorhabditis elegans 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-4
Pfam IPR000719 EMBL-EBI Protein kinase 0.011
Sequence
Target Sequence 
>C. ELEGANS:190808_AT
gatttccatctacttagacactttggtctacgattcggatgttaaattcggttttctacg
ggatgctatcacggactacgcacgaagctgcaagttgactctgaaagaaccattggtttg
gttcaaggaacggaatgataatgaatctggatcgacaccaactacttctgccaccgcctg
ctcaccatcatctagtactggaactggaacaggaacaggagtttcgaaaattgcatccaa
tattgatcaaaaatcaattgcatcggatcgaaatgaggagaactcgctggatggtagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCATCTACTTAGACACTTTG 322 427 780 Antisense
ACTTAGACACTTTGGTCTACGATTC 589 101 791 Antisense
AATTCGGTTTTCTACGGGATGCTAT 33 175 824 Antisense
TCTACGGGATGCTATCACGGACTAC 180 615 834 Antisense
TATCACGGACTACGCACGAAGCTGC 16 655 846 Antisense
GCACGAAGCTGCAAGTTGACTCTGA 465 315 859 Antisense
TCTGGATCGACACCAACTACTTCTG 415 607 925 Antisense
CCTGCTCACCATCATCTAGTACTGG 174 267 956 Antisense
ATCATCTAGTACTGGAACTGGAACA 676 19 966 Antisense
ACAGGAGTTTCGAAAATTGCATCCA 552 105 994 Antisense
GAGGAGAACTCGCTGGATGGTAGTA 484 403 1054 Antisense
Sequence Source Affymetrix Proprietary Database