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[190807_at] DNA-binding protein

Description K11H12.1 /REP_DB=WormBase Gene ID /WP=CE12146 /TR=SW:P91375 /GB=AAC24398.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 44      4grp_total > 58      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 430.8
(-0.6)
P 		599
(1.4)
P 		733.9
(3)
P 		223.2
(-3)
P 		511
B 315.3
(-1.6)
P 		458.4
(0.4)
P 		633.4
(3)
P 		222.9
(-3)
P 		411
C 362.5
(-1)
P 		569.6
(2.2)
P 		624.6
(3)
P 		236.2
(-3)
P 		388
avr 369.5
(-1) 		542.3
(1.3) 		664
(3) 		227.4
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 257.7
(-2.7)
P 		331.3
(0.6)
P 		383.7
(3)
P 		261
(-2.6)
P 		251.6
(-3)
P 		274.5
(-2)
P 		132
B 374
(0.3)
P 		423.2
(1.3)
P 		512.5
(3)
P 		199
(-3)
P 		286.8
(-1.3)
P 		313.9
(-0.8)
P 		314
C 344
(0.1)
P 		385.8
(3)
P 		311.8
(-2.2)
P 		300.2
(-3)
P 		327.8
(-1.1)
P 		311.6
(-2.2)
P 		86
avr 325.2
(-0.1) 		380.1
(2.1) 		402.7
(3) 		253.4
(-3) 		288.7
(-1.6) 		300
(-1.1) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 156.8
(1.7)
P 		130
(0.7)
P 		191.9
(3)
P 		32.7
(-3)
P 		159
B 100.6
(0.2)
P 		113.2
(1)
P 		146.8
(3)
P 		47.5
(-3)
P 		99
C 120
(-0.3)
P 		163.7
(1.2)
P 		217.7
(3)
P 		39.8
(-3)
P 		178
avr 125.8
(0.5) 		135.6
(0.9) 		185.5
(3) 		40
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 47.5
(-3)
P 		117.8
(3)
P 		83.6
(0.1)
P 		66.2
(-1.4)
P 		75.9
(-0.6)
P 		66.8
(-1.4)
P 		70
B 130.1
(2.3)
P 		140.9
(3)
P 		124.5
(1.9)
P 		52.7
(-3)
P 		116.5
(1.3)
P 		117
(1.4)
P 		88
C 127.5
(3)
P 		117.7
(2.1)
P 		79.3
(-1.3)
P 		60.4
(-3)
P 		106.1
(1.1)
P 		104.3
(0.9)
P 		67
avr 101.7
(0.8) 		125.5
(3) 		95.8
(0.3) 		59.8
(-3) 		99.5
(0.6) 		96
(0.3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10680
Sequence Type Exemplar sequence
Representative Public ID K11H12.1 NCBI
Target Description K11H12.1 /REP_DB=WormBase Gene ID /WP=CE12146 /TR=SW:P91375 /GB=AAC24398.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067562 NCBI Caenorhabditis elegans K11H12.1 (K11H12.1) mRNA, complete cds. 11/11 None
SNAP00000015760 ENSEMBL cdna:SNAP chromosome:CEL140:IV:652247:653414:-1 11/11 None
GENEFINDER00000015777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:652247:653402:-1 11/11 None
K11H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:652228:653421:-1 gene:K11H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:652252-653408(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNA-binding protein
Ensembl K11H12.1
Entrez Gene 176890 Entrez gene
SwissProt P91375 EMBL-EBI
WormBase CE12146 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
30528 transcription regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_499963 K11H12.1 [Caenorhabditis elegans] gb|AAC24398.1| Hypothetical protein K11H12.1 [Caenorhabditis elegans] sp|P91375|YN1I_CAEEL Hypothetical bolA-like protein K11H12.1 in chromosome IV 1.0E-57
blast CAE73731 Hypothetical protein CBG21257 [Caenorhabditis briggsae] 3.0E-53
blast ZP_00777362 BolA-like protein [Pseudoalteromonas atlantica T6c] gb|EAO66053.1| BolA-like protein [Pseudoalteromonas atlantica T6c] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002634 EMBL-EBI BolA-like protein 5.2E-40
Pfam IPR002634 EMBL-EBI BolA-like protein 5.2E-40
Sequence
Target Sequence 
>C. ELEGANS:190807_AT
attgagcgaaggcccagtagcacgtcttctcaaggagaagctgttcgccgcgttccagcc
aaaacatctcgaagtggaatgcgagagccacctgcacaacgttccaaaaggagccgagaa
gcacttccgagtgcaagttgtcagtgatgagttcgaggggaaacgtgtcatcgagagaca
tcgtcttgtgaacacgtgtcttgccaaggagcttgccacgactgtccacgcgcttcgaat
cgacgctattccaaccagcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGAGCGAAGGCCCAGTAGCACGT 172 5 21 Antisense
CTCAAGGAGAAGCTGTTCGCCGCGT 322 193 49 Antisense
GCGTTCCAGCCAAAACATCTCGAAG 479 291 70 Antisense
GTGGAATGCGAGAGCCACCTGCACA 563 491 94 Antisense
CCACCTGCACAACGTTCCAAAAGGA 68 271 108 Antisense
GCACTTCCGAGTGCAAGTTGTCAGT 677 315 141 Antisense
GAGTTCGAGGGGAAACGTGTCATCG 142 399 169 Antisense
GTGTCATCGAGAGACATCGTCTTGT 267 485 185 Antisense
GTCTTGTGAACACGTGTCTTGCCAA 242 469 203 Antisense
GTCTTGCCAAGGAGCTTGCCACGAC 307 467 218 Antisense
ATCGACGCTATTCCAACCAGCAAGT 58 37 259 Antisense
Sequence Source Affymetrix Proprietary Database