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[190806_s_at] ATPase epsilon chain /// ATPase epsilon chain

Description R05D3.6 /REP_DB=WormBase Gene ID /WP=CE00285 /TR=SW:P34539 /GB=AAK21439.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ATPase epsilon chain
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 26      6grp_total > 31      4grp_total > 05      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3578
1 2 3 4 range
A 5426.4
(-0.9)
P 		4707.8
(-2.4)
P 		4394.7
(-3)
P 		7290.3
(3)
P 		2896
B 5385.7
(0.1)
P 		4337.6
(-2.3)
P 		4043.8
(-3)
P 		6680
(3)
P 		2636
C 5080.2
(-1.4)
P 		4179
(-3)
P 		4173.5
(-3)
P 		7621.9
(3)
P 		3448
avr 5297.4
(-0.8) 		4408.1
(-2.6) 		4204
(-3) 		7197.4
(3) 		2993

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5038
1 2 3 4 5 6 range
A 5253.1
(-1.1)
P 		6689.8
(1.2)
P 		6713
(1.3)
P 		7809.5
(3)
P 		4675.3
(-2)
P 		4041.5
(-3)
P 		3768
B 5025.1
(0.9)
P 		6216.3
(3)
P 		5939.1
(2.5)
P 		5496.6
(1.7)
P 		5177.4
(1.2)
P 		2824.1
(-3)
P 		3392
C 6832.3
(1.9)
P 		6104.5
(1)
P 		7774.3
(3)
P 		5640.2
(0.4)
P 		6163.7
(1.1)
P 		2772
(-3)
P 		5002
avr 5703.5
(1.2) 		6336.9
(2.2) 		6808.8
(3) 		6315.4
(2.2) 		5338.8
(0.5) 		3212.5
(-3) 		3596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1039
1 2 3 4 range
A 1975.8
(3)
P 		1021.9
(-3)
P 		1148.9
(-2.2)
P 		1067.2
(-2.7)
P 		954
B 1717.5
(3)
P 		1071.3
(-2)
P 		937.1
(-3)
P 		1423.5
(0.7)
P 		780
C 1681.7
(3)
P 		1201.5
(-3)
P 		1454.6
(0.2)
P 		1285.2
(-2)
P 		480
avr 1791.7
(3) 		1098.2
(-3) 		1180.2
(-2.3) 		1258.6
(-1.6) 		694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1605
1 2 3 4 5 6 range
A 968.4
(-3)
P 		2379.2
(3)
P 		1461.9
(-0.9)
P 		1980.7
(1.3)
P 		1410.8
(-1.1)
P 		984
(-2.9)
P 		1411
B 1748.5
(1)
P 		2069.1
(2.8)
P 		1442.2
(-0.8)
P 		1455.9
(-0.7)
P 		2103.5
(3)
P 		1053.1
(-3)
P 		1050
C 2532.4
(3)
P 		1862.7
(0.5)
P 		1978.7
(0.9)
P 		1134.2
(-2.2)
P 		1994.5
(1)
P 		927.9
(-3)
P 		1605
avr 1749.8
(1.1) 		2103.7
(3) 		1627.6
(0.4) 		1523.6
(-0.1) 		1836.3
(1.6) 		988.3
(-3) 		1115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6650
Sequence Type Exemplar sequence
Representative Public ID R05D3.6 NCBI
Target Description R05D3.6 /REP_DB=WormBase Gene ID /WP=CE00285 /TR=SW:P34539 /GB=AAK21439.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=ATPase epsilon chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066440(11), NM_066438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066440 NCBI Caenorhabditis elegans R05D3.6 (R05D3.6) mRNA, complete cds. 11/11 None
NM_066438 NCBI Caenorhabditis elegans ZC262.5 (ZC262.5) mRNA, complete cds. 11/11 None
SNAP00000035974 ENSEMBL cdna:SNAP chromosome:CEL140:III:8350334:8350720:-1 11/11 None
GENEFINDER00000035992 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8350334:8350720:-1 11/11 None
SNAP00000039720 ENSEMBL cdna:SNAP chromosome:CEL140:III:8342139:8342525:-1 11/11 None
GENEFINDER00000039723 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8342139:8342525:-1 11/11 None
ZC262.5 ENSEMBL cdna:known chromosome:CEL140:III:8342139:8342525:-1 gene:ZC262.5 11/11 None
R05D3.6 ENSEMBL cdna:known chromosome:CEL140:III:8350334:8350720:-1 gene:R05D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8350329-8350716(-) 100.0 100.0
chrIII:8342134-8342521(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase epsilon chain
ATPase epsilon chain
Ensembl ZC262.5
R05D3.6
Entrez Gene 176178 Entrez gene
191132 Entrez gene
SwissProt P34539 EMBL-EBI
WormBase CE00285 Wormbase
CE00285 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21439 Hypothetical protein R05D3.6 [Caenorhabditis elegans] gb|AAK29993.1| Hypothetical protein ZC262.5 [Caenorhabditis elegans] ref|NP_498839.1| ZC262.5 [Caenorhabditis elegans] ref|NP_498841.1| R05D3.6 [Caenorhabditis elegans] sp|P34539|ATP5E_CAEEL Putative ATP synthase epsilon chain, mitochondrial 4.0E-24
blast AAB65352 Hypothetical protein F32D1.2 [Caenorhabditis elegans] ref|NP_504198.1| F32D1.2 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR006721 EMBL-EBI Mitochondrial ATP synthase epsilon chain 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:190806_S_AT
gactcaactacgtccgttattcacaaatcgccgcacaagtcgttcgtcagtgcaccaagg
gaggcgccaacgtgaagaagccccaagccaccttgaagaccactgcttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCAACTACGTCCGTTATTCACA 179 373 35 Antisense
TACGTCCGTTATTCACAAATCGCCG 115 641 43 Antisense
TTATTCACAAATCGCCGCACAAGTC 140 679 51 Antisense
TTCACAAATCGCCGCACAAGTCGTT 583 685 54 Antisense
CGCCGCACAAGTCGTTCGTCAGTGC 224 257 63 Antisense
GCACAAGTCGTTCGTCAGTGCACCA 675 317 67 Antisense
GTTCGTCAGTGCACCAAGGGAGGCG 643 439 76 Antisense
TGCACCAAGGGAGGCGCCAACGTGA 134 571 85 Antisense
GGAGGCGCCAACGTGAAGAAGCCCC 597 513 94 Antisense
GGCGCCAACGTGAAGAAGCCCCAAG 201 543 97 Antisense
CCACCTTGAAGACCACTGCTTGGGA 49 275 122 Antisense
Sequence Source Affymetrix Proprietary Database