[Home] | [Total List]

[190804_s_at] tyrosine-protein kinase

Description C34F11.5 /REP_DB=WormBase Gene ID /WP=CE04165 /TR=Q18462 /GB=AAA85760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 11.8
(-0.9)
A 		1.5
(-3)
A 		31.1
(3)
A 		8.3
(-1.6)
A 		30
B 4.5
(-0.3)
A 		6.3
(3)
A 		4.7
(0.1)
A 		3
(-3)
A 		3
C 5.8
(-2)
A 		5.8
(-2)
A 		1.3
(-3)
A 		28.1
(3)
A 		27
avr 7.4
(-1) 		4.5
(-3) 		12.4
(2.5) 		13.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 13.4
(-1)
A 		3.7
(-3)
A 		28.9
(2.3)
A 		5.3
(-2.7)
A 		30.5
(2.6)
A 		32.2
(3)
A 		29
B 8.6
(-2.3)
A 		2.7
(-3)
A 		6.4
(-2.6)
A 		4.8
(-2.8)
A 		26.7
(-0.2)
A 		53.5
(3)
A 		51
C 12.1
(-2.4)
A 		30.4
(-1.3)
A 		2.9
(-3)
A 		20.2
(-1.9)
A 		53.5
(0.1)
A 		100.9
(3)
A 		98
avr 11.4
(-2.9) 		12.3
(-2.7) 		12.7
(-2.7) 		10.1
(-3) 		36.9
(0.1) 		62.2
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.3
(0.1)
A 		0.3
(-3)
A 		8.1
(3)
A 		1.2
(-2.3)
A 		8
B 1.4
(1.8)
A 		1.6
(3)
A 		1.1
(0)
A 		0.6
(-3)
A 		1
C 1.9
(-0.9)
A 		1.7
(-1.2)
A 		0.4
(-3)
A 		4.7
(3)
A 		4
avr 2.5
(0.9) 		1.2
(-3) 		3.2
(3) 		2.2
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.5
(-2.1)
A 		1.3
(-3)
A 		6.3
(0.8)
A 		1.3
(-3)
A 		9.2
(3)
A 		7.8
(1.9)
A 		8
B 3
(-2.3)
A 		0.9
(-3)
A 		1.6
(-2.8)
A 		1.3
(-2.9)
A 		10.9
(0.1)
A 		20
(3)
A 		19
C 4.5
(-2.3)
A 		9.3
(-1.5)
A 		0.8
(-3)
A 		4.1
(-2.4)
A 		17.3
(0)
A 		33.8
(3)
A 		33
avr 3.3
(-2.6) 		3.8
(-2.5) 		2.9
(-2.8) 		2.2
(-3) 		12.5
(0.4) 		20.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190804_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4734
Sequence Type Exemplar sequence
Representative Public ID C34F11.5 NCBI
Target Description C34F11.5 /REP_DB=WormBase Gene ID /WP=CE04165 /TR=Q18462 /GB=AAA85760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062570 NCBI Caenorhabditis elegans C34F11.5 (C34F11.5) mRNA, complete cds. 11/11 None
SNAP00000021328 ENSEMBL cdna:SNAP chromosome:CEL140:II:5195885:5199212:1 11/11 None
GENEFINDER00000021349 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5195885:5199212:1 11/11 None
C34F11.5 ENSEMBL cdna:known chromosome:CEL140:II:5195885:5199212:1 gene:C34F11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5195882-5199210(+) 92.14 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase
Ensembl C34F11.5
Entrez Gene 266855 Entrez gene
SwissProt Q18462 EMBL-EBI
WormBase CE04165 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85760 Hypothetical protein C34F11.5 [Caenorhabditis elegans] ref|NP_494971.1| C34F11.5 [Caenorhabditis elegans] 0.0
blast CAE59063 Hypothetical protein CBG02348 [Caenorhabditis briggsae] 1.0E-137
blast CAE59063 Hypothetical protein CBG02348 [Caenorhabditis briggsae] 1.0E-134
blast CAE67145 Hypothetical protein CBG12568 [Caenorhabditis briggsae] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 1.2E-6
Pfam IPR000980 EMBL-EBI SH2 motif 2.3
Pfam IPR000719 EMBL-EBI Protein kinase 6.5E-41
Pfam IPR000719 EMBL-EBI Protein kinase 3.7E-37
Sequence
Target Sequence 
>C. ELEGANS:190804_S_AT
gaaggttcggaaggcttccactgcgaagaagactaagaaagccatgcaagaaaagaaacg
aaagagactgagagcaaagagacgattgagacggttcattatgcggaaacggttaaagaa
gaagttgaggaagagatatcgcggagccaaacgacgtcgaaagcgtcaaaagtatcgcct
ccgatatcgcaaaaagaagtaccagctgagaaaaggagcattgaacatggagcagaagga
acgtatgagggaattgaaaaaaaggcgtcgaatgaagaaacagaaaattgatagattgca
tcgaaatcgaaagattggacagattcttcgagaatggagagttgttcgaaaacttttgat
ggtcaaaagagctaggcggacgttgaagaaaaaaatgagaaagaaggtgaagcaacagat
gttgaaaaagatggaagaggcggcagcaaaggaaaatgagaaggaaatcaggaagacgaa
gaagaaaagtaaggataagaaggaaggaagaaaggaagaaagtaaggaaaaagcccataa
gaagtcgaagcccaaaaagtccaatcgccgtggtcatatgaatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTTCGGAAGGCTTCCACTGCG 646 333 2076 Antisense
GAAGGCTTCCACTGCGAAGAAGACT 504 333 2085 Antisense
GAGACGGTTCATTATGCGGAAACGG 229 393 2163 Antisense
GAGGAAGAGATATCGCGGAGCCAAA 471 405 2202 Antisense
GCGGAGCCAAACGACGTCGAAAGCG 107 291 2216 Antisense
AAGCGTCAAAAGTATCGCCTCCGAT 108 149 2236 Antisense
TATCGCCTCCGATATCGCAAAAAGA 268 653 2248 Antisense
GGTCAAAAGAGCTAGGCGGACGTTG 56 505 2436 Antisense
AAGCCCATAAGAAGTCGAAGCCCAA 146 149 2606 Antisense
GAAGCCCAAAAAGTCCAATCGCCGT 464 343 2622 Antisense
CAATCGCCGTGGTCATATGAATCAG 420 181 2637 Antisense
Sequence Source Affymetrix Proprietary Database