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[190803_at] 7TM chemoreceptor, srh family

Description K09D9.7 /REP_DB=WormBase Gene ID /WP=CE26377 /GEN=srh-7 /TR=Q9N5I6 /GB=AAF39926.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 69      4grp_total > 04      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 35.8
(0.3)
A 		12.5
(-3)
A 		17.1
(-2.4)
A 		55.1
(3)
M 		43
B 32.9
(-0.4)
M 		19.4
(-3)
A 		37
(0.3)
A 		51.1
(3)
A 		32
C 30.4
(-1.9)
A 		41.6
(-0.4)
A 		21.8
(-3)
A 		68
(3)
P 		46
avr 33
(-1.5) 		24.5
(-3) 		25.3
(-2.9) 		58.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.1
(1.9)
A 		5.3
(-2.2)
A 		12
(-0.5)
A 		1.9
(-3)
A 		20.6
(1.5)
A 		26.6
(3)
A 		25
B 9.3
(-1)
A 		15
(0.4)
A 		20.8
(1.8)
A 		1.2
(-3)
A 		25.6
(3)
A 		22
(2.1)
A 		24
C 10.4
(-0.9)
A 		4.7
(-2.2)
A 		13.4
(-0.2)
A 		16.6
(0.5)
A 		1.1
(-3)
A 		27.4
(3)
A 		26
avr 13.9
(-0.7) 		8.3
(-2.5) 		15.4
(-0.2) 		6.6
(-3) 		15.8
(-0) 		25.3
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13
(3)
A 		2.7
(-3)
A 		4.5
(-2)
A 		8.1
(0.1)
M 		10
B 10.5
(2.6)
M 		4.8
(-3)
A 		8.6
(0.7)
A 		10.9
(3)
A 		6
C 10.1
(0.4)
A 		12
(3)
A 		7.6
(-3)
A 		11.5
(2.3)
P 		4
avr 11.2
(3) 		6.5
(-3) 		6.9
(-2.5) 		10.2
(1.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.1
(0.6)
A 		1.9
(-1.6)
A 		2.6
(-0.9)
A 		0.5
(-3)
A 		6.2
(2.7)
A 		6.5
(3)
A 		6
B 3.2
(-1.3)
A 		5
(-0.2)
A 		5
(-0.2)
A 		0.3
(-3)
A 		10.4
(3)
A 		8.2
(1.7)
A 		10
C 3.9
(-0.6)
A 		1.4
(-2.3)
A 		3.4
(-1)
A 		3.3
(-1)
A 		0.4
(-3)
A 		9.2
(3)
A 		9
avr 3.7
(-0.9) 		2.8
(-1.7) 		3.7
(-0.9) 		1.4
(-3) 		5.7
(0.9) 		8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15799
Sequence Type Exemplar sequence
Representative Public ID K09D9.7 NCBI
Target Description K09D9.7 /REP_DB=WormBase Gene ID /WP=CE26377 /GEN=srh-7 /TR=Q9N5I6 /GB=AAF39926.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071717 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-7) (srh-7) mRNA, complete cds. 11/11 None
K09D9.7 ENSEMBL cdna:known chromosome:CEL140:V:4008040:4009631:1 gene:K09D9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015716 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4008039-4009631(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-7
Ensembl K09D9.7
Entrez Gene 191843 Entrez gene
SwissProt Q9N5I6 EMBL-EBI
WormBase CE26377 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 1.0E-159
blast AAF39919 Serpentine receptor, class h protein 8 [Caenorhabditis elegans] ref|NP_504117.1| Serpentine Receptor, class H family member (srh-8) [Caenorhabditis elegans] 1.0E-122
blast CAE62435 Hypothetical protein CBG06527 [Caenorhabditis briggsae] 8.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504118.1 7 15-37,50-72,92-114,134-156,198-220,241-263,278-300
K09D9.7 7 15-37,50-72,92-114,134-156,198-220,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:190803_AT
ggttttttgacatcgctgcagtatctgttgtcttgggagcttcatgtgcagcatgtgcat
tacttctaactataaaatgcataaattcagtaaaaactcaattgtcagcgaaaacaaaac
agatgcaccgaaattttctagtcagtctcgttatatcggccgcaatccatggagggtgta
ttttgacaccacttcttggttttctttgggctatctcatttgttatcagcttatcacaat
ttccttacttcccatatatgatggttcttatcatacaagaacatggcgcaatttccacta
ttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTTTGACATCGCTGCAGTATC 28 507 599 Antisense
GTATCTGTTGTCTTGGGAGCTTCAT 252 455 619 Antisense
GCAGCATGTGCATTACTTCTAACTA 460 313 646 Antisense
TAGTCAGTCTCGTTATATCGGCCGC 108 651 737 Antisense
TATCGGCCGCAATCCATGGAGGGTG 238 657 752 Antisense
TTTGACACCACTTCTTGGTTTTCTT 635 663 780 Antisense
TGGTTTTCTTTGGGCTATCTCATTT 464 551 795 Antisense
ATCTCATTTGTTATCAGCTTATCAC 139 33 811 Antisense
AGCTTATCACAATTTCCTTACTTCC 409 79 826 Antisense
ATTTCCTTACTTCCCATATATGATG 488 17 837 Antisense
ACATGGCGCAATTTCCACTATTACC 520 107 879 Antisense
Sequence Source Affymetrix Proprietary Database