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[190802_at] 7TM chemoreceptor, srh family

Description K09D9.8 /REP_DB=WormBase Gene ID /WP=CE26378 /GEN=srh-8 /TR=Q9N5I7 /GB=AAF39919.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 20      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 14.7
(-0.7)
A 		15.2
(-0.6)
A 		5.2
(-3)
A 		30.4
(3)
A 		25
B 5.4
(-2.5)
A 		20
(-0.6)
A 		1.7
(-3)
A 		47.6
(3)
A 		46
C 39.9
(0.8)
A 		27.4
(-0.5)
A 		1.4
(-3)
A 		62.7
(3)
A 		61
avr 20
(-0.7) 		20.9
(-0.5) 		2.8
(-3) 		46.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 27.3
(0.7)
A 		32
(1.4)
A 		3.6
(-2.8)
A 		23.1
(0)
A 		43.1
(3)
A 		2.5
(-3)
A 		41
B 10.7
(-1.3)
A 		30.9
(3)
A 		4.2
(-2.7)
A 		17.6
(0.2)
A 		2.8
(-3)
A 		21.2
(0.9)
A 		28
C 4.2
(-3)
A 		22.5
(3)
A 		14.8
(0.5)
A 		6.3
(-2.3)
A 		15.2
(0.6)
A 		21.3
(2.6)
A 		18
avr 14.1
(-1.1) 		28.5
(3) 		7.5
(-3) 		15.7
(-0.7) 		20.4
(0.7) 		15
(-0.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.4
(3)
A 		3.3
(-0.1)
A 		1.3
(-3)
A 		4.5
(1.7)
A 		4
B 1.7
(-2.2)
A 		4.9
(-0.2)
A 		0.4
(-3)
A 		10.1
(3)
A 		10
C 13.2
(3)
A 		7.9
(0.5)
A 		0.5
(-3)
A 		10.6
(1.8)
A 		13
avr 6.8
(1.8) 		5.4
(0.7) 		0.7
(-3) 		8.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(-0.9)
A 		11.4
(2.2)
A 		0.8
(-2.9)
A 		5.9
(-0.4)
A 		13
(3)
A 		0.6
(-3)
A 		12
B 3.7
(-1.3)
A 		10.3
(3)
A 		1
(-3)
A 		4.6
(-0.7)
A 		1.1
(-2.9)
A 		7.9
(1.5)
A 		9
C 1.5
(-2.8)
A 		6.9
(2.8)
A 		3.8
(-0.4)
A 		1.3
(-3)
A 		4.9
(0.7)
A 		7.1
(3)
A 		6
avr 3.4
(-1.8) 		9.5
(3) 		1.9
(-3) 		3.9
(-1.4) 		6.3
(0.5) 		5.2
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15688
Sequence Type Exemplar sequence
Representative Public ID K09D9.8 NCBI
Target Description K09D9.8 /REP_DB=WormBase Gene ID /WP=CE26378 /GEN=srh-8 /TR=Q9N5I7 /GB=AAF39919.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071716 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-8) (srh-8) mRNA, complete cds. 11/11 None
GENEFINDER00000015716 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4006084:4016533:1 11/11 None
K09D9.8 ENSEMBL cdna:known chromosome:CEL140:V:4005380:4007330:1 gene:K09D9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4005379-4007330(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-8
Ensembl K09D9.8
Entrez Gene 178808 Entrez gene
SwissProt Q9N5I7 EMBL-EBI
WormBase CE26378 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39919 Serpentine receptor, class h protein 8 [Caenorhabditis elegans] ref|NP_504117.1| Serpentine Receptor, class H family member (srh-8) [Caenorhabditis elegans] 1.0E-168
blast AAF39925 Serpentine receptor, class h protein 4 [Caenorhabditis elegans] ref|NP_504119.1| Serpentine Receptor, class H family member (srh-4) [Caenorhabditis elegans] 1.0E-135
blast AAF39919 Serpentine receptor, class h protein 8 [Caenorhabditis elegans] ref|NP_504117.1| Serpentine Receptor, class H family member (srh-8) [Caenorhabditis elegans] 1.0E-129
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 1.0E-128
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 1.0E-110
blast CAE62435 Hypothetical protein CBG06527 [Caenorhabditis briggsae] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.5E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.8E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-10
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504117.1 7 15-37,50-72,92-114,134-156,196-218,245-267,282-304
K09D9.8 7 15-37,50-72,92-114,134-156,196-218,245-267,282-304
GENEFINDER00000015716 24 10-32,63-85,100-122,142-164,204-226,247-269,274-296,303-325,352-374,386-408,428-450,470-492,532-554,629-651,676-698,719-738,782-804,825-847,962-984,1011-1033,1128-1150,1170-1192,1235-1257,1278-1300
Sequence
Target Sequence 
>C. ELEGANS:190802_AT
atgttctttatatgcgtggttttcgtgtgcatttttacaattttgagttatccagacttg
aagcatcagaacgagtataaattaaaaatggaacagagattcggtcaatttcaaccgtac
atgtggtgtgataattgcttctttttcaactttgattcaacaattttcaaattgttttat
gtgatatgtgcagttacagtagtcacaggcactacatcagcaactatcgcttttggaata
acaattaaatgtataaactcagtgagaactcgattatctgcaaaaactaaacagatgcat
cgaaactttttgataagcttacttatagcggctgcaatccacggaggttgcattttgatt
ccattacttggttttctctgggccatttcatttgttgtcagcttatcccaatgtccatat
ttcccttacattttggtcttaataatacaagagcacggagctgtgtccacaatcacaatg
tttttgtccaataatttgttgaggaaggcgttgatgcgaatgctgatgattccggagtcg
agaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCTTTATATGCGTGGTTTTCG 533 47 427 Antisense
GTGGTTTTCGTGTGCATTTTTACAA 123 489 442 Antisense
CAGGCACTACATCAGCAACTATCGC 337 209 632 Antisense
CTTATAGCGGCTGCAATCCACGGAG 157 223 748 Antisense
GAGGTTGCATTTTGATTCCATTACT 650 401 770 Antisense
ATTACTTGGTTTTCTCTGGGCCATT 423 13 789 Antisense
TGGGCCATTTCATTTGTTGTCAGCT 135 555 805 Antisense
TCAGCTTATCCCAATGTCCATATTT 644 623 824 Antisense
CATATTTCCCTTACATTTTGGTCTT 182 215 842 Antisense
CAAGAGCACGGAGCTGTGTCCACAA 586 183 874 Antisense
ATGCTGATGATTCCGGAGTCGAGAA 676 41 946 Antisense
Sequence Source Affymetrix Proprietary Database