[Home] | [Total List]

[190799_at] 7TM chemoreceptor, srh family

Description K09D9.6 /REP_DB=WormBase Gene ID /WP=CE26376 /GEN=srh-4 /TR=Q9N5I5 /GB=AAF39925.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 25
(-1.1)
A 		3.6
(-3)
A 		17.2
(-1.8)
A 		72.2
(3)
A 		69
B 16.6
(-1.7)
A 		48.4
(3)
A 		7.7
(-3)
A 		19.6
(-1.2)
A 		41
C 22.2
(0.2)
A 		23.8
(0.6)
A 		10.8
(-3)
A 		32.5
(3)
A 		22
avr 21.3
(-1.1) 		25.3
(-0.3) 		11.9
(-3) 		41.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 18.7
(0.2)
A 		11.3
(-3)
A 		24.8
(2.8)
A 		16.4
(-0.8)
A 		25.3
(3)
A 		15.9
(-1)
A 		14
B 22.2
(1)
A 		27
(3)
A 		13
(-2.9)
A 		12.8
(-3)
A 		18.3
(-0.7)
A 		12.7
(-3)
A 		14
C 11.5
(-2.7)
A 		18
(-1.8)
A 		14.1
(-2.3)
A 		55.2
(3)
A 		9.1
(-3)
A 		17.6
(-1.9)
A 		46
avr 17.5
(-2) 		18.8
(-1.4) 		17.3
(-2.1) 		28.1
(3) 		17.6
(-2) 		15.4
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.1
(2.1)
A 		0.8
(-3)
A 		4.5
(-0.7)
A 		10.6
(3)
A 		10
B 5.3
(-0.9)
A 		12
(3)
A 		1.8
(-3)
A 		4.2
(-1.6)
A 		10
C 7.3
(3)
A 		6.9
(2.3)
A 		3.7
(-3)
A 		5.5
(0)
A 		4
avr 7.2
(3) 		6.6
(2.1) 		3.3
(-3) 		6.8
(2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.4
(-3)
A 		4
(-2.1)
A 		5.4
(-0.1)
A 		4.1
(-2)
A 		7.6
(3)
A 		3.9
(-2.3)
A 		4
B 7.7
(1.7)
A 		9
(3)
A 		3.1
(-3)
A 		3.4
(-2.7)
A 		7.4
(1.4)
A 		4.7
(-1.4)
A 		6
C 4.2
(-2)
A 		5.5
(-1.1)
A 		3.6
(-2.5)
A 		11.1
(3)
A 		2.9
(-3)
A 		5.9
(-0.8)
A 		8
avr 5.1
(-0) 		6.2
(3) 		4
(-3) 		6.2
(3) 		6
(2.5) 		4.8
(-0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15912
Sequence Type Exemplar sequence
Representative Public ID K09D9.6 NCBI
Target Description K09D9.6 /REP_DB=WormBase Gene ID /WP=CE26376 /GEN=srh-4 /TR=Q9N5I5 /GB=AAF39925.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071718 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-4) (srh-4) mRNA, complete cds. 11/11 None
GENEFINDER00000015716 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4006084:4016533:1 11/11 None
K09D9.6 ENSEMBL cdna:known chromosome:CEL140:V:4010283:4011779:1 gene:K09D9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015707 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4010282-4011779(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-4
Ensembl K09D9.6
Entrez Gene 191841 Entrez gene
SwissProt Q9N5I5 EMBL-EBI
WormBase CE26376 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39925 Serpentine receptor, class h protein 4 [Caenorhabditis elegans] ref|NP_504119.1| Serpentine Receptor, class H family member (srh-4) [Caenorhabditis elegans] 0.0
blast AAC78161 Serpentine receptor, class h protein 3 [Caenorhabditis elegans] ref|NP_503481.1| Serpentine Receptor, class H family member (srh-3) [Caenorhabditis elegans] 1.0E-148
blast CAE62434 Hypothetical protein CBG06526 [Caenorhabditis briggsae] 1.0E-144
blast AAF39925 Serpentine receptor, class h protein 4 [Caenorhabditis elegans] ref|NP_504119.1| Serpentine Receptor, class H family member (srh-4) [Caenorhabditis elegans] 1.0E-135
blast AAF39919 Serpentine receptor, class h protein 8 [Caenorhabditis elegans] ref|NP_504117.1| Serpentine Receptor, class H family member (srh-8) [Caenorhabditis elegans] 1.0E-129
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.2E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.8E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-10
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504119.1 7 15-37,50-72,92-114,135-154,198-220,241-263,278-300
K09D9.6 7 15-37,50-72,92-114,135-154,198-220,241-263,278-300
GENEFINDER00000015716 24 10-32,63-85,100-122,142-164,204-226,247-269,274-296,303-325,352-374,386-408,428-450,470-492,532-554,629-651,676-698,719-738,782-804,825-847,962-984,1011-1033,1128-1150,1170-1192,1235-1257,1278-1300
Sequence
Target Sequence 
>C. ELEGANS:190799_AT
gtgtgacaactgcttcttctgtaattttgattccctaactttccgatggtttttctacgt
ggctgttgttgccgtagtacttggtggcttcactggcggatttgcgttccatgtaactgt
gcaagcactgaaaagtgttagctctaacctgactgctaaaactagggcaacacaccggaa
ttacctatggagtatttctctagcggctgctgtccacgtaatatgcattgttctaccgct
tctcggaattctacaaactatcaatttcataattagcctcagcgagttccgatttttccc
attcatcttaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGACAACTGCTTCTTCTGTAAT 559 487 552 Antisense
ACGTGGCTGTTGTTGCCGTAGTACT 233 93 608 Antisense
CGTAGTACTTGGTGGCTTCACTGGC 246 247 624 Antisense
TTCACTGGCGGATTTGCGTTCCATG 78 687 640 Antisense
GGGCAACACACCGGAATTACCTATG 123 491 716 Antisense
ATGGAGTATTTCTCTAGCGGCTGCT 59 51 738 Antisense
CGGCTGCTGTCCACGTAATATGCAT 136 243 755 Antisense
AATATGCATTGTTCTACCGCTTCTC 588 173 771 Antisense
ACCGCTTCTCGGAATTCTACAAACT 64 89 786 Antisense
TAGCCTCAGCGAGTTCCGATTTTTC 156 651 825 Antisense
CCGATTTTTCCCATTCATCTTAACA 625 263 840 Antisense
Sequence Source Affymetrix Proprietary Database