[Home] | [Total List]

[190797_at]

Description ZK1098.10 /REP_DB=WormBase Gene ID /WP=CE00363 /TR=SW:P34609 /GB=CAA80140.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 447.6
(3)
P 		287.3
(-0.4)
P 		165.1
(-3)
P 		210.8
(-2)
P 		283
B 375
(3)
P 		205.9
(-3)
P 		234.9
(-2)
P 		291.2
(0)
P 		169
C 539.5
(3)
P 		306.4
(-1.5)
P 		228.8
(-3)
P 		255.4
(-2.5)
P 		311
avr 454
(3) 		266.5
(-1.6) 		209.6
(-3) 		252.5
(-1.9) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 473.6
(2.7)
P 		486.8
(3)
P 		208.5
(-3)
P 		280.9
(-1.4)
P 		384.5
(0.8)
P 		324.9
(-0.5)
P 		278
B 475.8
(3)
P 		402.3
(1.2)
P 		344.9
(-0.2)
P 		326
(-0.7)
P 		229.6
(-3)
P 		234.9
(-2.9)
P 		246
C 744.7
(3)
P 		371.4
(-1.4)
P 		334.2
(-1.8)
P 		236.5
(-3)
P 		284.5
(-2.4)
P 		252.1
(-2.8)
P 		508
avr 564.7
(3) 		420.2
(0.1) 		295.9
(-2.5) 		281.1
(-2.8) 		299.5
(-2.4) 		270.6
(-3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 163
(3)
P 		62.4
(-1.6)
P 		43.2
(-2.4)
P 		30.9
(-3)
P 		132
B 119.6
(3)
P 		50.9
(-3)
P 		54.4
(-2.7)
P 		62
(-2)
P 		69
C 178.6
(3)
P 		88.1
(-1)
P 		79.7
(-1.4)
P 		43.1
(-3)
P 		136
avr 153.7
(3) 		67.1
(-1.8) 		59.1
(-2.2) 		45.3
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 87.3
(-1)
P 		173.1
(3)
P 		45.4
(-3)
P 		71.2
(-1.8)
P 		116
(0.3)
P 		79.1
(-1.4)
P 		128
B 165.5
(3)
P 		133.9
(0.7)
P 		83.7
(-3)
P 		86.4
(-2.8)
P 		93.3
(-2.3)
P 		87.6
(-2.7)
P 		82
C 276
(3)
P 		113.3
(-1.3)
P 		85.1
(-2)
P 		47.6
(-3)
P 		92.1
(-1.8)
P 		84.4
(-2)
P 		228
avr 176.3
(3) 		140.1
(1) 		71.4
(-2.8) 		68.4
(-3) 		100.5
(-1.2) 		83.7
(-2.1) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7222
Sequence Type Exemplar sequence
Representative Public ID ZK1098.10 NCBI
Target Description ZK1098.10 /REP_DB=WormBase Gene ID /WP=CE00363 /TR=SW:P34609 /GB=CAA80140.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027810(11), NM_171221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027810 NCBI Caenorhabditis elegans UNCoordinated family member (unc-16) (unc-16) mRNA, complete cds. 11/11 None
NM_171221 NCBI Caenorhabditis elegans UNCoordinated family member (unc-16) (unc-16) mRNA, complete cds. 11/11 A 
SNAP00000005020 ENSEMBL cdna:SNAP chromosome:CEL140:III:9550618:9556011:1 11/11 None
GENEFINDER00000005021 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9550618:9556011:1 11/11 None
ZK1098.10b ENSEMBL cdna:known chromosome:CEL140:III:9546154:9556401:1 gene:ZK1098.10 11/11 None
ZK1098.10a ENSEMBL cdna:known chromosome:CEL140:III:9546465:9556011:1 gene:ZK1098.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9546604-9556007(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1098.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45611 Hypothetical protein ZK1098.10b [Caenorhabditis elegans] ref|NP_001022981.1| UNCoordinated family member (unc-16) [Caenorhabditis elegans] gb|AAL23934.1| UNC-16 [Caenorhabditis elegans] sp|P34609|JIP_CAEEL JNK-interacting protein (JIP) (JNK MAP kinase scaffold protein) (Uncoordinated protein 16) 0.0
blast CAA80140 Hypothetical protein ZK1098.10a [Caenorhabditis elegans] ref|NP_741263.3| UNCoordinated family member (unc-16) [Caenorhabditis elegans] 0.0
blast CAE65181 Hypothetical protein CBG10054 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190797_AT
gtcgattcgtctcgattcaactctccgactctatcatgcacatacatatgaacaccttca
agatgttgatatagaaccatatgtgacaaaaatgcttgggacatctaaacttgatttctc
atacatgcgaacaacggcgcttcttgtctcaaatcgaagactttggattggaactggaac
tggtgttatcatttctgtgccattttctggacaactcgaaaagaagatcgaaacaaaaga
ttcaaaacgtcctgcgggaccaggtggactcgtcagagtttatggagcaacttcagaaaa
cgccactaacgacgaaaaaacaaatgatgatttcattccgtactgcaacctggcacatgc
tcaattatcattccatggtcataaagacagtgtcaagttcttccttggagtacctggagc
atcgaagaacggagaagatgagtcggcagaagtgactctacgtcgaatgttgatcatgtc
tggtggagatggatatattgactttaggataggtgaagaaaacgaaccggagctgacagg
gcaatcaattcggccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGATTCGTCTCGATTCAACTCTC 319 473 2814 Antisense
TCCGACTCTATCATGCACATACATA 703 595 2837 Antisense
TACATGCGAACAACGGCGCTTCTTG 29 645 2935 Antisense
GTTATCATTTCTGTGCCATTTTCTG 449 447 2998 Antisense
CAAAACGTCCTGCGGGACCAGGTGG 605 187 3056 Antisense
GATGATTTCATTCCGTACTGCAACC 303 411 3139 Antisense
GCAACCTGGCACATGCTCAATTATC 302 321 3158 Antisense
AGTTCTTCCTTGGAGTACCTGGAGC 424 47 3209 Antisense
GTCGGCAGAAGTGACTCTACGTCGA 649 471 3255 Antisense
AAACGAACCGGAGCTGACAGGGCAA 449 125 3333 Antisense
GACAGGGCAATCAATTCGGCCACGT 239 367 3348 Antisense
Sequence Source Affymetrix Proprietary Database