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[190788_at]

Description F57F10.1 /REP_DB=WormBase Gene ID /WP=CE28476 /TR=Q09570 /GB=AAC46712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Anion exchange protein
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 05      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1382
1 2 3 4 range
A 1785.5
(3)
P 		652.8
(-2.8)
P 		620.9
(-3)
P 		764
(-2.3)
P 		1165
B 1924
(3)
P 		786.8
(-1.9)
P 		542.3
(-3)
P 		858.1
(-1.6)
P 		1382
C 1736.4
(3)
P 		782.2
(-2.2)
P 		637.6
(-3)
P 		744.1
(-2.4)
P 		1099
avr 1815.3
(3) 		740.6
(-2.3) 		600.3
(-3) 		788.7
(-2.1) 		1215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1409
1 2 3 4 5 6 range
A 1409.7
(2.4)
P 		1508.2
(3)
P 		569
(-3)
P 		808.5
(-1.5)
P 		793.9
(-1.6)
P 		721.5
(-2)
P 		939
B 1126.3
(3)
P 		989.8
(1.7)
P 		491.2
(-3)
P 		909
(0.9)
P 		674.6
(-1.3)
P 		507.7
(-2.8)
P 		635
C 1889.1
(3)
P 		975.3
(-0.9)
P 		1140.5
(-0.2)
P 		668
(-2.2)
P 		852.3
(-1.4)
P 		480.4
(-3)
P 		1409
avr 1475
(3) 		1157.8
(0.9) 		733.6
(-1.9) 		795.2
(-1.5) 		773.6
(-1.6) 		569.9
(-3) 		905
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 650.1
(3)
P 		141.7
(-2.7)
P 		162.3
(-2.4)
P 		111.8
(-3)
P 		538
B 613.5
(3)
P 		194.3
(-2.2)
P 		125.7
(-3)
P 		182.9
(-2.3)
P 		488
C 574.8
(3)
P 		224.9
(-1.7)
P 		222.2
(-1.7)
P 		125.5
(-3)
P 		449
avr 612.8
(3) 		187
(-2.4) 		170.1
(-2.6) 		140.1
(-3) 		473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 259.9
(-1)
P 		536.4
(3)
P 		123.9
(-3)
P 		205.1
(-1.8)
P 		239.6
(-1.3)
P 		175.7
(-2.2)
P 		413
B 391.9
(3)
P 		329.5
(1.6)
P 		119.3
(-3)
P 		240.7
(-0.3)
P 		274.1
(0.4)
P 		189.3
(-1.5)
P 		273
C 700.2
(3)
P 		297.6
(-1.3)
P 		290.3
(-1.3)
P 		134.3
(-3)
P 		275.8
(-1.5)
P 		160.8
(-2.7)
P 		566
avr 450.7
(3) 		387.8
(1.6) 		177.8
(-2.9) 		193.4
(-2.6) 		263.2
(-1.1) 		175.3
(-3) 		275
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5219
Sequence Type Exemplar sequence
Representative Public ID F57F10.1 NCBI
Target Description F57F10.1 /REP_DB=WormBase Gene ID /WP=CE28476 /TR=Q09570 /GB=AAC46712.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Anion exchange protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182218(11), NM_062827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182218 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-3) (abts-3) mRNA, complete cds. 11/11 None
NM_062827 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-3) (abts-3) mRNA, complete cds. 11/11 None
SNAP00000040341 ENSEMBL cdna:SNAP chromosome:CEL140:II:6152607:6156802:1 11/11 None
GENEFINDER00000040343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6147139:6156802:1 11/11 None
F57F10.1b ENSEMBL cdna:known chromosome:CEL140:II:6136047:6157116:1 gene:F57F10.1 11/11 None
F57F10.1a ENSEMBL cdna:known chromosome:CEL140:II:6147139:6156802:1 gene:F57F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6149887-6156799(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57F10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98009 Anion/bicarbonate transporter family protein 3, isoform b [Caenorhabditis elegans] ref|NP_872018.1| Anion/Bicarbonate TranSporter family member (abts-3) [Caenorhabditis elegans] 0.0
blast AAZ91355 Anion/bicarbonate transporter family protein 3, isoform c [Caenorhabditis elegans] 0.0
blast AAC46712 Anion/bicarbonate transporter family protein 3, isoform a [Caenorhabditis elegans] ref|NP_495228.1| Anion/Bicarbonate TranSporter family member (abts-3) [Caenorhabditis elegans] gb|AAX34417.1| anion transporter ABTS-3 [Caenorhabditis elegans] 0.0
blast CAE59253 Hypothetical protein CBG02581 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872018.1 11 287-309,322-344,364-386,406-423,482-501,514-536,559-581,602-624,666-688,737-759,764-781
NP_495228.1 11 449-471,484-506,526-548,568-585,644-663,676-698,721-743,764-786,828-850,899-921,926-943
F57F10.1b 11 287-309,322-344,364-386,406-423,482-501,514-536,559-581,602-624,666-688,737-759,764-781
F57F10.1a 11 449-471,484-506,526-548,568-585,644-663,676-698,721-743,764-786,828-850,899-921,926-943
SNAP00000040341 11 206-228,241-263,283-305,325-342,401-420,433-455,478-500,521-543,585-607,656-678,683-700
GENEFINDER00000040343 11 724-746,759-781,801-823,843-860,919-938,951-973,996-1018,1039-1061,1103-1125,1174-1196,1201-1218
Sequence
Target Sequence 
>C. ELEGANS:190788_AT
ggtttttggtcttccttggatgcacggagccctcccacactcgcctcttcatctcagagc
cttggctgatgttgaggaaagggtttctcaaggacatgttcatgaagtaataatgaatgt
tcgtgagactcgtctcgcttctctcattgctcatgttatgattcttgtttcaatgttctt
cctgattccgtatccacttcaactcatcccaacatctgttctacatggtcttttcctata
catggcactcacgtcgttgtctggaaatgagatgtttgaacgattacttctattgataac
tgaacagcaagcctacccaccaactcattacattcgtaaagtgccccaacgaaaggtgca
tctgttcacagcctgccaactgctccagcttattattctctgtgcatttggtttttcacc
gtatccattcatcgagatggtgtttccaattgtgtgtttcttctttctacctattcgaca
cacgttgattccgcgtctcattgattaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTTGGTCTTCCTTGGATGCAC 145 507 2547 Antisense
CTCTTCATCTCAGAGCCTTGGCTGA 473 229 2591 Antisense
ACATCTGTTCTACATGGTCTTTTCC 160 107 2758 Antisense
GGTCTTTTCCTATACATGGCACTCA 356 503 2773 Antisense
ATAACTGAACAGCAAGCCTACCCAC 240 25 2842 Antisense
TACCCACCAACTCATTACATTCGTA 390 645 2860 Antisense
CTGCCAACTGCTCCAGCTTATTATT 355 237 2919 Antisense
TTTTTCACCGTATCCATTCATCGAG 499 675 2958 Antisense
GGTGTTTCCAATTGTGTGTTTCTTC 28 501 2985 Antisense
TTCTTTCTACCTATTCGACACACGT 372 687 3007 Antisense
TTGATTCCGCGTCTCATTGATTACA 59 705 3031 Antisense
Sequence Source Affymetrix Proprietary Database