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[190787_at] 7TM chemoreceptor, srh family

Description DC2.2 /REP_DB=WormBase Gene ID /WP=CE20631 /GEN=srh-78 /TR=Q9UAW3 /GB=AAD14723.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 21      4grp_total > 20      6grp_cgc > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 44.4
(-1.7)
P 		39.2
(-2.2)
A 		31.3
(-3)
A 		91.5
(3)
P 		60
B 60.1
(3)
P 		59.2
(2.9)
P 		22.3
(-3)
A 		39.6
(-0.3)
A 		38
C 52.6
(0.5)
P 		37.3
(-1.1)
A 		19.7
(-3)
A 		76.3
(3)
P 		57
avr 52.4
(0.8) 		45.2
(-0.2) 		24.4
(-3) 		69.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 72.5
(3)
A 		63.5
(1.9)
P 		65
(2.1)
P 		32.7
(-1.8)
A 		46.7
(-0.1)
M 		23.2
(-3)
A 		49
B 38.2
(-1.8)
P 		80.5
(3)
P 		54.7
(0.1)
P 		42.7
(-1.3)
P 		41.4
(-1.4)
P 		27.7
(-3)
A 		53
C 34.5
(-1.6)
A 		39.1
(-1)
P 		30.7
(-2.2)
A 		67.2
(3)
M 		55.6
(1.4)
P 		24.7
(-3)
A 		43
avr 48.4
(0.9) 		61
(3) 		50.1
(1.2) 		47.5
(0.7) 		47.9
(0.8) 		25.2
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16.2
(3)
P 		8.5
(-2.8)
A 		8.2
(-3)
A 		13.4
(0.9)
P 		8
B 19.2
(3)
P 		14.6
(1)
P 		5.2
(-3)
A 		8.4
(-1.6)
A 		14
C 17.4
(3)
P 		10.7
(-0.8)
A 		6.9
(-3)
A 		12.9
(0.4)
P 		11
avr 17.6
(3) 		11.3
(-0.5) 		6.8
(-3) 		11.6
(-0.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.4
(-0.3)
A 		22.6
(3)
P 		14.1
(-0)
P 		8.3
(-2.1)
A 		14.1
(-0)
M 		5.7
(-3)
A 		17
B 13.3
(-1.9)
P 		26.8
(3)
P 		13.3
(-1.9)
P 		11.3
(-2.6)
P 		16.8
(-0.6)
P 		10.3
(-3)
A 		17
C 12.8
(-0.1)
A 		11.9
(-0.6)
P 		7.8
(-3)
A 		13.5
(0.4)
M 		18
(3)
P 		8.3
(-2.7)
A 		10
avr 13.2
(-0.5) 		20.4
(3) 		11.7
(-1.2) 		11
(-1.6) 		16.3
(1) 		8.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15506
Sequence Type Exemplar sequence
Representative Public ID DC2.2 NCBI
Target Description DC2.2 /REP_DB=WormBase Gene ID /WP=CE20631 /GEN=srh-78 /TR=Q9UAW3 /GB=AAD14723.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070755 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-78) (srh-78) mRNA, complete cds. 11/11 None
DC2.2 ENSEMBL cdna:known chromosome:CEL140:V:216983:219302:1 gene:DC2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026558 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:216982-219302(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-78
Ensembl DC2.2
Entrez Gene 191872 Entrez gene
SwissProt Q9UAW3 EMBL-EBI
WormBase CE20631 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503156 Serpentine Receptor, class H family member (srh-78) [Caenorhabditis elegans] gb|AAD14723.1| Serpentine receptor, class h protein 78 [Caenorhabditis elegans] 0.0
blast AAC26911 Serpentine receptor, class h protein 79 [Caenorhabditis elegans] ref|NP_504930.1| Serpentine Receptor, class H family member (srh-79) [Caenorhabditis elegans] 3.0E-99
blast CAE73657 Hypothetical protein CBG21163 [Caenorhabditis briggsae] 5.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503156.1 7 27-49,70-92,107-129,150-172,217-239,260-282,292-314
DC2.2 7 27-49,70-92,107-129,150-172,217-239,260-282,292-314
Sequence
Target Sequence 
>C. ELEGANS:190787_AT
agttcgtctattacacagttcgcgtgataatctgtgtcttcttttcttccattctattcc
tatatctacccgagaaccaagaagccgcacttcttgaaatacttactaaaattccgtgcc
caactgaggaatacttcaaaaacactgtattcgtgctagttgtggacaaaaactatatta
ctttgcttggacgtatcatgaatgtattttttgtaatcgaaattcttcaaattaattatt
ttgttatctattgtatttataatttattcttttcgtcaaacaaattcacatcggcgaaga
ctaaaaagttgcaaatctcctttttccggagtatcgtaatgcaagtgagcattccattat
tgtttctgattccaatttttattattatgacgacatcaatagcatttggatattataatc
aggctctaaccaactataccataatccacgcgtcgcttcatggattgctgtcaacgttca
ccatattggcaattcataagccttatcgagattttattttttcaaagttcagaaaacccg
cactggtggaggcatcgaaaccttcagtaaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGTCTATTACACAGTTCGCGT 129 65 458 Antisense
GTTCGCGTGATAATCTGTGTCTTCT 171 443 475 Antisense
TTCCATTCTATTCCTATATCTACCC 246 699 504 Antisense
CTACCCGAGAACCAAGAAGCCGCAC 435 225 523 Antisense
GTTGCAAATCTCCTTTTTCCGGAGT 512 437 765 Antisense
GCATTCCATTATTGTTTCTGATTCC 686 307 806 Antisense
ATCAGGCTCTAACCAACTATACCAT 663 27 875 Antisense
ATAATCCACGCGTCGCTTCATGGAT 626 25 898 Antisense
GATTGCTGTCAACGTTCACCATATT 340 433 920 Antisense
AGAAAACCCGCACTGGTGGAGGCAT 75 73 988 Antisense
GGCATCGAAACCTTCAGTAACCAGC 413 535 1008 Antisense
Sequence Source Affymetrix Proprietary Database