[Home] | [Total List]

[190786_s_at] serine carboxypeptidase

Description Y16B4A.2 /REP_DB=WormBase Gene ID /WP=CE21374 /TR=Q17679 /GB=CAA19443.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 02      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4003
1 2 3 4 range
A 4163.1
(3)
P 		3772.8
(2.4)
P 		2748.4
(0.9)
P 		177.7
(-3)
P 		3985
B 3489.9
(2.6)
P 		3700.1
(3)
P 		3203.6
(2.1)
P 		205.1
(-3)
P 		3495
C 3912.1
(3)
P 		3047.9
(1.6)
P 		3374.1
(2.1)
P 		159.8
(-3)
P 		3752
avr 3855
(3) 		3506.9
(2.4) 		3108.7
(1.8) 		180.9
(-3) 		3674

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3169
1 2 3 4 5 6 range
A 4040.3
(3)
P 		3996.6
(2.9)
P 		2599.9
(0.1)
P 		1530.3
(-2.1)
P 		1311.9
(-2.5)
P 		1064
(-3)
P 		2976
B 4118.2
(3)
P 		3173.9
(1.2)
P 		2597.1
(0.1)
P 		1640.8
(-1.7)
P 		1308.4
(-2.3)
P 		949.6
(-3)
P 		3169
C 4006.4
(3)
P 		2786.9
(0.5)
P 		3167.2
(1.3)
P 		1403.5
(-2.3)
P 		1850.9
(-1.4)
P 		1072.7
(-3)
P 		2934
avr 4055
(3) 		3319.1
(1.5) 		2788.1
(0.5) 		1524.9
(-2) 		1490.4
(-2.1) 		1028.8
(-3) 		3026
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1490
1 2 3 4 range
A 1515.8
(3)
P 		819
(0.2)
P 		718.5
(-0.2)
P 		26
(-3)
P 		1490
B 1112.9
(3)
P 		913.8
(1.9)
P 		742.4
(0.9)
P 		43.7
(-3)
P 		1069
C 1295
(3)
P 		876.3
(1)
P 		1176
(2.4)
P 		26.9
(-3)
P 		1268
avr 1307.9
(3) 		869.7
(0.9) 		879
(1) 		32.2
(-3) 		1276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1226
1 2 3 4 5 6 range
A 744.8
(-0.5)
P 		1421.4
(3)
P 		566.2
(-1.4)
P 		388.1
(-2.3)
P 		395.9
(-2.3)
P 		259
(-3)
P 		1162
B 1432.9
(3)
P 		1056.5
(0.9)
P 		630.6
(-1.5)
P 		434.6
(-2.6)
P 		531.6
(-2)
P 		354.1
(-3)
P 		1079
C 1485
(3)
P 		850.4
(-0.2)
P 		806.1
(-0.4)
P 		282.2
(-3)
P 		598.9
(-1.4)
P 		359.1
(-2.6)
P 		1203
avr 1220.9
(3) 		1109.4
(2.3) 		667.6
(-0.7) 		368.3
(-2.7) 		508.8
(-1.8) 		324.1
(-3) 		897
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190786_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17325
Sequence Type Exemplar sequence
Representative Public ID Y16B4A.2 NCBI
Target Description Y16B4A.2 /REP_DB=WormBase Gene ID /WP=CE21374 /TR=Q17679 /GB=CAA19443.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078051 NCBI Caenorhabditis elegans Y16B4A.2 (Y16B4A.2) mRNA, complete cds. 11/11 None
Y16B4A.2 ENSEMBL cdna:known chromosome:CEL140:X:14761884:14771769:-1 gene:Y16B4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14761953-14771742(-) 98.61 100.0
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl Y16B4A.2
Entrez Gene 181572 Entrez gene
SwissProt Q17679 EMBL-EBI
WormBase CE21374 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252606_AT serine carboxypeptidase III, putative at
YEAST_2:1778109_AT Vacuolar carboxypeptidase Y (proteinase C), involved in protein degradation in the vacuole and required for full protein degradation during sporulation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94110 Hypothetical protein Y16B4A.2 [Caenorhabditis elegans] emb|CAB07544.1| Hypothetical protein Y16B4A.2 [Caenorhabditis elegans] emb|CAA19443.1| Hypothetical protein Y16B4A.2 [Caenorhabditis elegans] ref|NP_510452.1| Y16B4A.2 [Caenorhabditis elegans] 0.0
blast CAE63228 Hypothetical protein CBG07588 [Caenorhabditis briggsae] 0.0
blast AAK39256 Hypothetical protein K10C2.1 [Caenorhabditis elegans] ref|NP_509079.2| K10C2.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.C-terminal fragment of elongation factor SelB All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; C-terminal fragment of elongation factor SelB 2.20000004768372
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190786_S_AT
gcccaagagctcaatggacattccaatataacagtaccttccaaccaacagttgctggat
accaaacttcgtacacttcaaacgctattaatattgatgtgctcactgttaagggctccg
gtcacttcgtgccacttgatcgtccacagcaagctcttcaaatgatctacaactttgtga
agtccagaggttacaacactccattcgatctaaatagcaattttactacaacaacaacaa
catccaccaccacaacaacaccaggaactggacctacagtaacagcagcccaaaccacca
caacaacgccaagcactccaggcgccggtactacaggaacaccaggaactggacctacag
taacagcagcaccaacaaacggcatttcaactacacaaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAAGAGCTCAATGGACATTCCA 536 287 5846 Antisense
TAACAGTACCTTCCAACCAACAGTT 289 639 5874 Antisense
GGATACCAAACTTCGTACACTTCAA 191 511 5902 Antisense
TGATGTGCTCACTGTTAAGGGCTCC 270 565 5940 Antisense
ATCGTCCACAGCAAGCTCTTCAAAT 587 35 5984 Antisense
GTTACAACACTCCATTCGATCTAAA 698 445 6035 Antisense
CTGGACCTACAGTAACAGCAGCCCA 554 241 6113 Antisense
CGCCGGTACTACAGGAACACCAGGA 228 253 6168 Antisense
CTGGACCTACAGTAACAGCAGCACC 553 241 6194 Antisense
CAGCAGCACCAACAAACGGCATTTC 45 203 6209 Antisense
ACGGCATTTCAACTACACAACCAAT 486 95 6224 Antisense
Sequence Source Affymetrix Proprietary Database