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[190784_at] phosphoprotein RGP4 like

Description F45B8.2 /REP_DB=WormBase Gene ID /WP=CE10430 /TR=O45523 /GB=CAB05727.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein RGP4 like
Cluster 6grp_total > 97      4grp_total > 01      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 10.1
(-2.7)
A 		5.3
(-3)
A 		36
(-1.4)
A 		118.3
(3)
A 		113
B 42.3
(0)
A 		8.7
(-3)
A 		13.9
(-2.5)
A 		74.9
(3)
A 		66
C 3.2
(-3)
A 		3.1
(-3)
A 		8.4
(-2.6)
A 		75.1
(3)
M 		72
avr 18.5
(-2.1) 		5.7
(-3) 		19.4
(-2) 		89.4
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 8
(-3)
A 		9.1
(-2.9)
A 		34.2
(0.2)
A 		43.2
(1.3)
A 		39.6
(0.9)
A 		56.9
(3)
A 		49
B 33.1
(0.1)
A 		14.8
(-2.4)
A 		27.8
(-0.7)
A 		10.6
(-3)
A 		44.3
(1.6)
A 		54.8
(3)
P 		44
C 9.6
(-2.7)
A 		54.3
(2.5)
A 		7.4
(-3)
A 		31.3
(-0.2)
A 		50.1
(2)
A 		58.5
(3)
P 		51
avr 16.9
(-3) 		26.1
(-1.6) 		23.1
(-2.1) 		28.4
(-1.3) 		44.7
(1.2) 		56.7
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.7
(-2)
A 		1.1
(-3)
A 		9.4
(0.1)
A 		17.3
(3)
A 		16
B 13.5
(1.9)
A 		2.1
(-3)
A 		3.2
(-2.5)
A 		16
(3)
A 		14
C 1.1
(-2.9)
A 		0.9
(-3)
A 		2.9
(-2)
A 		12.7
(3)
M 		12
avr 6.1
(-1) 		1.4
(-3) 		5.2
(-1.4) 		15.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-3)
A 		3.2
(-2.2)
A 		7.4
(-0.1)
A 		11
(1.6)
A 		11.9
(2)
A 		13.9
(3)
A 		12
B 11.5
(-0)
A 		4.9
(-2.3)
A 		6.7
(-1.7)
A 		2.8
(-3)
A 		18
(2.2)
A 		20.4
(3)
P 		18
C 3.6
(-2.4)
A 		16.6
(2)
A 		1.9
(-3)
A 		6.3
(-1.5)
A 		16.2
(1.8)
A 		19.6
(3)
P 		18
avr 5.5
(-2.9) 		8.2
(-1.6) 		5.3
(-3) 		6.7
(-2.3) 		15.4
(1.8) 		18
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17746
Sequence Type Exemplar sequence
Representative Public ID F45B8.2 NCBI
Target Description F45B8.2 /REP_DB=WormBase Gene ID /WP=CE10430 /TR=O45523 /GB=CAB05727.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein RGP4 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078081 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-10) (rgs-10) mRNA, complete cds. 11/11 None
SNAP00000024498 ENSEMBL cdna:SNAP chromosome:CEL140:X:14962838:14963911:1 11/11 None
GENEFINDER00000024502 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14962838:14963911:1 11/11 None
F45B8.2 ENSEMBL cdna:known chromosome:CEL140:X:14962838:14963911:1 gene:F45B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14962837-14963911(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphoprotein RGP4 like
Gene Symbol rgs-10
Ensembl F45B8.2
Entrez Gene 185764 Entrez gene
SwissProt O45523 EMBL-EBI
WormBase CE10430 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05727 Hypothetical protein F45B8.2 [Caenorhabditis elegans] ref|NP_510482.1| Regulator of G protein Signaling family member (rgs-10) [Caenorhabditis elegans] 1.0E-145
blast CAB05728 Hypothetical protein F45B8.1 [Caenorhabditis elegans] ref|NP_510483.1| Regulator of G protein Signaling family member (rgs-11) [Caenorhabditis elegans] 9.0E-75
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 4.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.1E-11
Sequence
Target Sequence 
>C. ELEGANS:190784_AT
tttccatgtcggcttgctacagaatggaacccgaaaaacaagaaagatgctccaccgaag
aagaaaaatgctttagtgattctggagcgtgttgcgtctcggagcaaccaaaatgcagta
tcacgagttattaatattttgcgatcaaaagttcacttgatgttttccagctctaatgaa
cttccgtccagcgaggatgttgaacgttggaagaagtcgcctgaaactttggccgccagc
gagtacggttgcaatctattcattcagtttctgaaagaacagacttcggagaatgaagtt
gacttttggttggattgccagaagttcagatcctcaaagatgagttcgagacagaacgaa
gcgcgccgcatttttgacgagtattttgccatgggttctcccaaaaagatctacatcgag
agatacctctggtgcgtagttcaagcctatcttgtcaatgatccaggatggcgacacacc
tttgatgttgctcaagcatacgttggcctgaaattggcgaagaagtcgcacaaaaagttc
ctcgaagaccccctctacttggaccttgttgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATGTCGGCTTGCTACAGAAT 449 669 199 Antisense
GTGATTCTGGAGCGTGTTGCGTCTC 153 485 274 Antisense
CACTTGATGTTTTCCAGCTCTAATG 535 195 352 Antisense
GAACTTCCGTCCAGCGAGGATGTTG 300 349 376 Antisense
AGAAGTCGCCTGAAACTTTGGCCGC 79 75 410 Antisense
GCCGCCAGCGAGTACGGTTGCAATC 352 285 430 Antisense
GAACGAAGCGCGCCGCATTTTTGAC 543 345 552 Antisense
CGAGTATTTTGCCATGGGTTCTCCC 442 249 576 Antisense
GAGAGATACCTCTGGTGCGTAGTTC 192 393 616 Antisense
TGGCGACACACCTTTGATGTTGCTC 317 545 667 Antisense
CCCCTCTACTTGGACCTTGTTGAGT 376 261 748 Antisense
Sequence Source Affymetrix Proprietary Database