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[190783_at] transpanin

Description F01E11.4 /REP_DB=WormBase Gene ID /WP=CE25841 /GEN=tsp-16 /TR=Q19083 /GB=AAA83573.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_total > 24      4grp_total > 30      6grp_cgc > 31      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 360.4
(3)
P 		195.5
(-1.5)
P 		139.3
(-3)
A 		291.4
(1.1)
P 		221
B 370.3
(3)
P 		257.2
(0.1)
P 		137.4
(-3)
A 		228.9
(-0.6)
P 		233
C 359.1
(3)
P 		220.6
(-0.7)
P 		136.3
(-3)
M 		312.5
(1.7)
P 		223
avr 363.3
(3) 		224.4
(-0.7) 		137.7
(-3) 		277.6
(0.7) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 322.8
(3)
P 		202.1
(0.2)
P 		262.9
(1.6)
P 		166.9
(-0.6)
P 		122
(-1.6)
A 		61.8
(-3)
A 		261
B 411.2
(3)
P 		309.7
(1.1)
P 		248.9
(0)
P 		159.6
(-1.6)
P 		108.1
(-2.6)
A 		84.7
(-3)
A 		327
C 283.5
(2.6)
P 		300.1
(3)
P 		203.9
(0.5)
P 		202.2
(0.4)
M 		94.4
(-2.4)
A 		71.6
(-3)
A 		229
avr 339.2
(3) 		270.6
(1.5) 		238.6
(0.7) 		176.2
(-0.7) 		108.2
(-2.2) 		72.7
(-3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 131.2
(3)
P 		42.4
(-2.6)
P 		36.4
(-3)
A 		42.7
(-2.6)
P 		95
B 118.1
(3)
P 		63.5
(-0.8)
P 		31.8
(-3)
A 		48.8
(-1.8)
P 		86
C 118.9
(3)
P 		63.4
(-1.7)
P 		47.5
(-3)
M 		52.7
(-2.6)
P 		71
avr 122.7
(3) 		56.4
(-1.7) 		38.6
(-3) 		48.1
(-2.3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 59.5
(1.7)
P 		71.9
(3)
P 		57.2
(1.4)
P 		42.3
(-0.1)
P 		36.8
(-0.7)
A 		15
(-3)
A 		57
B 143.1
(3)
P 		103.1
(0.8)
P 		60.4
(-1.5)
P 		42.3
(-2.4)
P 		43.9
(-2.3)
A 		31.6
(-3)
A 		112
C 105.1
(3)
P 		91.6
(2)
P 		51.9
(-0.9)
P 		40.7
(-1.8)
M 		30.5
(-2.5)
A 		24
(-3)
A 		81
avr 102.6
(3) 		88.9
(2) 		56.5
(-0.5) 		41.8
(-1.6) 		37.1
(-2) 		23.5
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17042
Sequence Type Exemplar sequence
Representative Public ID F01E11.4 NCBI
Target Description F01E11.4 /REP_DB=WormBase Gene ID /WP=CE25841 /GEN=tsp-16 /TR=Q19083 /GB=AAA83573.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076782 NCBI Caenorhabditis elegans F01E11.4 (transpanin) mRNA, complete cds. 11/11 None
GENEFINDER00000033571 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6994733:6996741:-1 11/11 None
F01E11.4 ENSEMBL cdna:known chromosome:CEL140:X:6994733:6996741:-1 gene:F01E11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033565 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6994732-6996741(-) 100.0 100.0
Public Domain and Genome References
Gene Title transpanin
Gene Symbol tsp-16
Ensembl F01E11.4
Entrez Gene 192066 Entrez gene
SwissProt Q19083 EMBL-EBI
WormBase CE25841 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83573 Tetraspanin family protein 16 [Caenorhabditis elegans] ref|NP_509183.1| F01E11.4 [Caenorhabditis elegans] 0.0
blast CAE65829 Hypothetical protein CBG10951 [Caenorhabditis briggsae] 1.0E-112
blast CAE65829 Hypothetical protein CBG10951 [Caenorhabditis briggsae] 1.0E-104
blast CAE66995 Hypothetical protein CBG12393 [Caenorhabditis briggsae] 4.0E-11
Protein Domains
Database ID Description E-Value
scop a.4.1.Tetracyclin repressor-like, N-terminal domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Tetracyclin repressor-like, N-terminal domain 9.39999961853027
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 4.0E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509183.1 5 15-37,95-117,127-149,165-187,326-348
F01E11.4 5 15-37,95-117,127-149,165-187,326-348
GENEFINDER00000033571 5 15-37,95-117,127-149,165-187,350-372
Sequence
Target Sequence 
>C. ELEGANS:190783_AT
gggttatgaccttaattctcacgtaagcagctctgacatggagcattggatgaagcattc
aatcaaggaagattatgggaatccaacagcacctcatataatggaagagtggaataaagc
tcatcggcagttcaaatgttgtggagtacgaaacctaacggacttcgtggagagtaaatg
gtacataatgcagaagaagcacccaaggcagcgaattccagatagctgttgtgctagttg
tgcaacaatgcatgaaagattctgcgttgcatttttcaaagagcccggaaatcagccaca
tcaactggttaaaaatcaaactatttgcttacaagctagtaacgggtgtttatcagcgga
ttcttcaatcgctaatcgagaaccactccgtacaacgctggagtttttctcatttagaat
ttttatttattcactttctttcttagcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTATGACCTTAATTCTCACGTA 81 497 570 Antisense
TTCTCACGTAAGCAGCTCTGACATG 646 691 585 Antisense
GGAATCCAACAGCACCTCATATAAT 201 533 647 Antisense
AATAAAGCTCATCGGCAGTTCAAAT 463 171 682 Antisense
GCACCCAAGGCAGCGAATTCCAGAT 131 315 768 Antisense
AAAGAGCCCGGAAATCAGCCACATC 603 121 847 Antisense
GTAACGGGTGTTTATCAGCGGATTC 306 461 908 Antisense
AGCGGATTCTTCAATCGCTAATCGA 55 83 924 Antisense
CGCTAATCGAGAACCACTCCGTACA 491 253 939 Antisense
ACAACGCTGGAGTTTTTCTCATTTA 318 111 961 Antisense
TATTCACTTTCTTTCTTAGCTTTTT 497 663 997 Antisense
Sequence Source Affymetrix Proprietary Database