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[190781_at] phosphoprotein RGP4 like

Description F45B8.1 /REP_DB=WormBase Gene ID /WP=CE10428 /TR=O45524 /GB=CAB05728.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein RGP4 like
Cluster 6grp_total > 77      4grp_total > 11      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 13.1
(0.7)
A 		16.4
(3)
A 		7.9
(-3)
A 		12.8
(0.5)
A 		9
B 7.7
(-3)
A 		40.5
(2.3)
A 		11.8
(-2.3)
A 		44.5
(3)
A 		37
C 37.8
(0.4)
A 		10.8
(-3)
A 		30.2
(-0.5)
A 		57.8
(3)
A 		47
avr 19.5
(-2.2) 		22.6
(-1.3) 		16.6
(-3) 		38.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 27.6
(-1.5)
A 		10.2
(-3)
A 		9.8
(-3)
A 		16
(-2.5)
A 		53.7
(0.7)
A 		80.2
(3)
A 		70
B 34.4
(-0.7)
A 		18.7
(-3)
A 		33.3
(-0.8)
A 		45.7
(1)
A 		47.3
(1.2)
A 		59.2
(3)
M 		41
C 8.3
(-2.8)
A 		11.8
(-2.6)
A 		71.1
(0.7)
A 		4.3
(-3)
A 		7.8
(-2.8)
A 		111.4
(3)
P 		107
avr 23.4
(-2.2) 		13.6
(-3) 		38.1
(-0.9) 		22
(-2.3) 		36.3
(-1.1) 		83.6
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.8
(3)
A 		3.6
(0.5)
A 		2.1
(-2.6)
A 		1.9
(-3)
A 		3
B 2.5
(-3)
A 		10
(3)
A 		2.7
(-2.8)
A 		9.5
(2.6)
A 		8
C 12.5
(3)
A 		3.1
(-3)
A 		10.5
(1.7)
A 		9.7
(1.2)
A 		9
avr 6.6
(1.7) 		5.6
(-1.4) 		5.1
(-3) 		7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.1
(-2)
A 		3.6
(-2.5)
A 		2.1
(-3)
A 		4.1
(-2.3)
A 		16.2
(1.9)
A 		19.5
(3)
A 		17
B 12
(-0.8)
A 		6.2
(-3)
A 		8.1
(-2.3)
A 		12.1
(-0.8)
A 		19.2
(1.9)
A 		22.1
(3)
M 		16
C 3.1
(-2.6)
A 		3.6
(-2.6)
A 		18.1
(-0.2)
A 		0.9
(-3)
A 		2.5
(-2.7)
A 		37.3
(3)
P 		36
avr 6.7
(-2.4) 		4.5
(-3) 		9.4
(-1.7) 		5.7
(-2.7) 		12.6
(-0.8) 		26.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17896
Sequence Type Exemplar sequence
Representative Public ID F45B8.1 NCBI
Target Description F45B8.1 /REP_DB=WormBase Gene ID /WP=CE10428 /TR=O45524 /GB=CAB05728.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein RGP4 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078082 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-11) (rgs-11) mRNA, complete cds. 11/11 None
SNAP00000024499 ENSEMBL cdna:SNAP chromosome:CEL140:X:14964529:14965411:1 9/11 None
F45B8.1 ENSEMBL cdna:known chromosome:CEL140:X:14964515:14965849:1 gene:F45B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14964528-14965674(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphoprotein RGP4 like
Gene Symbol rgs-11
Ensembl F45B8.1
Entrez Gene 181590 Entrez gene
SwissProt O45524 EMBL-EBI
WormBase CE10428 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05728 Hypothetical protein F45B8.1 [Caenorhabditis elegans] ref|NP_510483.1| Regulator of G protein Signaling family member (rgs-11) [Caenorhabditis elegans] 1.0E-149
blast CAB05728 Hypothetical protein F45B8.1 [Caenorhabditis elegans] ref|NP_510483.1| Regulator of G protein Signaling family member (rgs-11) [Caenorhabditis elegans] 1.0E-139
blast CAB05727 Hypothetical protein F45B8.2 [Caenorhabditis elegans] ref|NP_510482.1| Regulator of G protein Signaling family member (rgs-10) [Caenorhabditis elegans] 4.0E-70
blast CAB05727 Hypothetical protein F45B8.2 [Caenorhabditis elegans] ref|NP_510482.1| Regulator of G protein Signaling family member (rgs-10) [Caenorhabditis elegans] 4.0E-67
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 3.0E-28
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:190781_AT
ccttatcgactcgctaccgaatggaactgggaaagtagaaggctgaggaagagagatgcg
ttggtgattctggagcttgttgcattatcggatgaaacaaataaacgaggttctgtatca
cgaattatgaatacagtacgctcgaaagttcacttgatgttctccagctcgaccgagctt
ccgtctttccaagaaattgaaaattggaagaagtctccgggacttttagccgccagcaag
tatggctgcgcactgttcatccagtttctgaagcagcagacttcggaaaatgaagttgac
ttctggttggattgtcagaaattcagatcctcaactgcaaagatcagttggaaaaataaa
gaagtgcaccgaattcttgatcagtttctcagctcttcagctccaagaaagatagatatg
gagacgtccatcttggccagatgtatggagtacgttgaacacattgagggatggaaatat
acttttgatgtcgcgcaagcatatgttggattgaagtttccaaaggagtcccacaaaaag
ttccttgaagaccctttgtacttggatctacttgaactggttatttctggacggagctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTATCGACTCGCTACCGAATGGA 429 265 208 Antisense
GATGCGTTGGTGATTCTGGAGCTTG 98 415 262 Antisense
ACAGTACGCTCGAAAGTTCACTTGA 529 105 340 Antisense
CGAGCTTCCGTCTTTCCAAGAAATT 636 247 381 Antisense
GCCGCCAGCAAGTATGGCTGCGCAC 51 287 436 Antisense
TGCGCACTGTTCATCCAGTTTCTGA 460 583 454 Antisense
AGTGCACCGAATTCTTGATCAGTTT 174 61 570 Antisense
TTTCTCAGCTCTTCAGCTCCAAGAA 331 671 592 Antisense
TATGGAGACGTCCATCTTGGCCAGA 413 655 624 Antisense
GAAGACCCTTTGTACTTGGATCTAC 371 339 754 Antisense
ACTGGTTATTTCTGGACGGAGCTGC 9 97 783 Antisense
Sequence Source Affymetrix Proprietary Database