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[190780_at] glucose 1-dehydrogenase

Description F02C12.2 /REP_DB=WormBase Gene ID /WP=CE03132 /TR=Q19108 /GB=CAA91019.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glucose 1-dehydrogenase
Cluster 6grp_total > 06      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 199.6
(3)
A 		110.1
(-1.5)
A 		81.1
(-3)
A 		137.4
(-0.1)
A 		119
B 187.3
(3)
P 		152.9
(1.4)
A 		142.4
(0.9)
A 		57.3
(-3)
A 		130
C 220.4
(3)
M 		100.7
(-1.6)
A 		63.8
(-3)
A 		146.9
(0.2)
A 		157
avr 202.4
(3) 		121.2
(-1.6) 		95.8
(-3) 		113.9
(-2) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 182.9
(3)
A 		107.9
(-0.1)
A 		149.1
(1.6)
A 		37.7
(-3)
A 		95
(-0.6)
A 		47.6
(-2.6)
A 		145
B 148.8
(3)
P 		101.2
(-0.3)
A 		113
(0.5)
A 		71.3
(-2.4)
A 		100
(-0.4)
A 		62.6
(-3)
A 		86
C 177.3
(2.8)
P 		182.5
(3)
A 		87.5
(-1.2)
A 		100.6
(-0.7)
A 		48.2
(-3)
A 		66.4
(-2.2)
A 		134
avr 169.7
(3) 		130.5
(0.9) 		116.5
(0.1) 		69.9
(-2.4) 		81.1
(-1.8) 		58.9
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 72.7
(3)
A 		23.9
(-2.6)
A 		21.2
(-2.9)
A 		20.1
(-3)
A 		53
B 59.7
(3)
P 		37.8
(0.2)
A 		33
(-0.4)
A 		12.2
(-3)
A 		48
C 73
(3)
M 		29
(-2.2)
A 		22.2
(-3)
A 		24.8
(-2.7)
A 		51
avr 68.5
(3) 		30.2
(-1.6) 		25.5
(-2.2) 		19
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 33.7
(2)
A 		38.4
(3)
A 		32.5
(1.8)
A 		9.6
(-3)
A 		28.7
(1)
A 		11.6
(-2.6)
A 		29
B 51.8
(3)
P 		33.7
(-0.3)
A 		27.5
(-1.4)
A 		18.9
(-3)
A 		40.6
(1)
A 		23.4
(-2.2)
A 		33
C 65.7
(3)
P 		55.7
(1.8)
A 		22.3
(-2.2)
A 		20.2
(-2.4)
A 		15.6
(-3)
A 		22.2
(-2.2)
A 		50
avr 50.4
(3) 		42.6
(1.6) 		27.4
(-1) 		16.2
(-3) 		28.3
(-0.9) 		19.1
(-2.5) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17595
Sequence Type Exemplar sequence
Representative Public ID F02C12.2 NCBI
Target Description F02C12.2 /REP_DB=WormBase Gene ID /WP=CE03132 /TR=Q19108 /GB=CAA91019.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glucose 1-dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077828 NCBI Caenorhabditis elegans F02C12.2 (F02C12.2) mRNA, complete cds. 11/11 None
SNAP00000017011 ENSEMBL cdna:SNAP chromosome:CEL140:X:13398120:13399152:-1 11/11 None
GENEFINDER00000017017 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13398120:13399152:-1 11/11 None
F02C12.2 ENSEMBL cdna:known chromosome:CEL140:X:13398120:13399152:-1 gene:F02C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13398119-13399152(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucose 1-dehydrogenase
Ensembl F02C12.2
Entrez Gene 184076 Entrez gene
SwissProt Q19108 EMBL-EBI
WormBase CE03132 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91019 Hypothetical protein F02C12.2 [Caenorhabditis elegans] ref|NP_510229.1| F02C12.2 [Caenorhabditis elegans] 1.0E-144
blast AAA82475 Hypothetical protein C06E4.3 [Caenorhabditis elegans] ref|NP_501156.1| C06E4.3 [Caenorhabditis elegans] 1.0E-111
blast CAE74777 Hypothetical protein CBG22607 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.4E-59
Sequence
Target Sequence 
>C. ELEGANS:190780_AT
tgttaacaacgccggagcttccattcccgatgctaagaaaagaactggaattgatcaagg
aattgaaacttacgaacaagtcatgaagcttaatgttcaaagtgtaatcgagatgactca
aaaagttcgtcctcacttggcaaaaagtcgaggtgaaattgtgaatgtttcaagcgtggt
agcgttgaaagctgggtggacacgaactccatactacccattggcaaaggcagctcttga
ccaatatacaagaagtgcagcgattgctttaatatctgaaggtattcgcgtaaacactgt
gaatcctggaattgtgcaaactgggtttcaagcaaatgctagtggttcatcgtcagatga
tgcacagaagttttacgacgacatgggctcaaatacaactgcaattccatgtggatttgc
tggacgtccagagcacatcgccaaggctatcgcatttttggctgatcgaaattcttcaga
atacatcgttggtcaaaatatcattgcggacggaggcacaagcttggttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTAACAACGCCGGAGCTTCCATT 371 561 285 Antisense
GCTTCCATTCCCGATGCTAAGAAAA 649 305 301 Antisense
CAAAAAGTTCGTCCTCACTTGGCAA 496 189 403 Antisense
GGGTGGACACGAACTCCATACTACC 370 497 478 Antisense
CTACCCATTGGCAAAGGCAGCTCTT 382 225 498 Antisense
GAAGGTATTCGCGTAAACACTGTGA 261 335 562 Antisense
AATGCTAGTGGTTCATCGTCAGATG 1 167 619 Antisense
GAAGTTTTACGACGACATGGGCTCA 67 337 651 Antisense
CAGAGCACATCGCCAAGGCTATCGC 562 205 713 Antisense
AGGCTATCGCATTTTTGGCTGATCG 216 51 728 Antisense
CGGACGGAGGCACAAGCTTGGTTCT 303 241 791 Antisense
Sequence Source Affymetrix Proprietary Database