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[190779_s_at] Yeast LEO1 protein like

Description B0035.11 /REP_DB=WormBase Gene ID /WP=CE05166 /TR=Q17431 /GB=CAA97406.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast LEO1 protein like
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 53      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 904.4
(3)
P 		717.8
(0.2)
P 		692
(-0.2)
P 		504.5
(-3)
P 		400
B 691.1
(2.2)
P 		706.4
(3)
P 		643.1
(-0.3)
P 		593
(-3)
P 		113
C 768.7
(3)
P 		627.3
(-1.4)
P 		697.7
(0.8)
P 		574
(-3)
P 		195
avr 788.1
(3) 		683.8
(0.3) 		677.6
(0.1) 		557.2
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 520.2
(-3)
P 		734.5
(-0.3)
P 		560.1
(-2.5)
P 		816.2
(0.8)
P 		715.5
(-0.5)
P 		993
(3)
P 		473
B 698.5
(-1.2)
P 		733.2
(-0.3)
P 		630.7
(-3)
P 		685.2
(-1.6)
P 		763.1
(0.5)
P 		857.1
(3)
P 		226
C 806.5
(-1)
P 		727.5
(-3)
P 		738.3
(-2.7)
P 		851.2
(0.1)
P 		751.3
(-2.4)
P 		970.4
(3)
P 		243
avr 675.1
(-2.4) 		731.7
(-1.2) 		643
(-3) 		784.2
(-0.1) 		743.3
(-1) 		940.2
(3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 329.3
(3)
P 		155.8
(-1.1)
P 		180.9
(-0.5)
P 		73.9
(-3)
P 		255
B 220.4
(3)
P 		174.5
(0.1)
P 		149
(-1.6)
P 		126.4
(-3)
P 		94
C 254.5
(3)
P 		180.4
(0.2)
P 		243.2
(2.6)
P 		96.8
(-3)
P 		158
avr 268.1
(3) 		170.2
(-0.5) 		191
(0.3) 		99
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 95.9
(-3)
P 		261.2
(3)
P 		122
(-2.1)
P 		207
(1)
P 		215.9
(1.4)
P 		241.8
(2.3)
P 		165
B 243.1
(0.2)
P 		244.1
(0.3)
P 		153.2
(-3)
P 		181.5
(-2)
P 		310
(2.7)
P 		319.6
(3)
P 		166
C 298.9
(2)
P 		222
(-1)
P 		187.9
(-2.3)
P 		171.2
(-3)
P 		243.1
(-0.2)
P 		324.8
(3)
P 		154
avr 212.6
(-0.5) 		242.4
(0.7) 		154.4
(-3) 		186.6
(-1.6) 		256.3
(1.3) 		295.4
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8456
Sequence Type Exemplar sequence
Representative Public ID B0035.11 NCBI
Target Description B0035.11 /REP_DB=WormBase Gene ID /WP=CE05166 /TR=Q17431 /GB=CAA97406.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast LEO1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069734 NCBI Caenorhabditis elegans B0035.11 (B0035.11) mRNA, complete cds. 11/11 None
SNAP00000035841 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11327737:11329340:-1 11/11 None
GENEFINDER00000035851 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11327737:11329340:-1 11/11 None
B0035.11 ENSEMBL cdna:known chromosome:CEL140:IV:11327597:11329340:-1 gene:B0035.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11327742-11329346(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast LEO1 protein like
Ensembl B0035.11
Entrez Gene 178052 Entrez gene
SwissProt Q17431 EMBL-EBI
WormBase CE05166 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247565_AT leo1-like family protein at
CANINE:1586599_AT similar to senescence downregulated leo1-like cfa
CANINE_2:CFA.9446.1.A1_S_AT similar to senescence downregulated leo1-like cfa
CANINE_2:CFAAFFX.23952.1.S1_AT similar to senescence downregulated leo1-like cfa
CANINE_2:CFAAFFX.23955.1.S1_S_AT similar to senescence downregulated leo1-like cfa
DROSOPHILA_2:1630079_AT Another transcription unit dm
DROSGENOME1:154540_AT Another transcription unit dm
CHICKEN:GGA.2004.1.S1_AT similar to senescence downregulated leo1-like gga
HU35KSUBA:RC_AA074729_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
U133_X3P:HS.296420.0.A1_3P_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U133_PLUS_2:235096_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U133B:235096_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U95C:53272_I_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U95C:53273_R_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U133_PLUS_2:242316_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U133B:242316_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HG-U95D:80553_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
HU35KSUBD:RC_AA521063_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
U133_X3P:HS.149419.0.A1_3P_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) hs
MG-U74CV2:134020_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) mm
MG-U74BV2:163625_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) mm
MOE430B:1455293_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) mm
MOUSE430_2:1455293_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) mm
MG-U74CV2:135602_AT Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (Leo1), mRNA mm
RG-U34A:RC_AI639169_AT similar to senescence downregulated leo1-like rn
RAE230A:1371832_AT similar to senescence downregulated leo1-like rn
RAT230_2:1371832_AT similar to senescence downregulated leo1-like rn
YEAST_2:1776255_AT Component of the Paf1 complex, which associates with RNA polymerase II and is involved in histone methylation Sc
Protein Similarities
Method ID Description E-Value
blast CAA97406 Hypothetical protein B0035.11 [Caenorhabditis elegans] ref|NP_502135.1| B0035.11 [Caenorhabditis elegans] 0.0
blast CAE62056 Hypothetical protein CBG06074 [Caenorhabditis briggsae] 1.0E-160
blast AAH83358 Leo1 protein [Mus musculus] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR007149 EMBL-EBI Leo1-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190779_S_AT
aatgtctctatacctcggaaacgaaattttcgaagtctcattggtgccgctgaattccaa
taatcttccccatctttacgttaagcagccaacattaatgtcggctcaagctgttcttac
acatcgtatgaccttccgtcctcactcgactgattcccaaactcacagaaaagtcacact
caatatggcagatcgaagcaggaagaatgctcaagttaaagtcatggacgatgttggtca
gaatccggaaattacacggcgtgagaatgcccggaaggaggaagaatcacttcgtgcaca
catccgacgtactcagatggttcggaataactttaaagttcgtggtccgagatatgcagg
acaatattctgatgatgaagatatgccaacgtcatccagaaaaggaaagaagaaggaagc
accaattattggtgccagctcagaaagtgaggacgatcatgcggataccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTCTCTATACCTCGGAAACGAA 637 163 735 Antisense
ATTTTCGAAGTCTCATTGGTGCCGC 409 5 760 Antisense
ATCTTCCCCATCTTTACGTTAAGCA 21 31 797 Antisense
GCTCAAGCTGTTCTTACACATCGTA 217 301 838 Antisense
TCTTACACATCGTATGACCTTCCGT 533 611 849 Antisense
CTCGACTGATTCCCAAACTCACAGA 72 233 879 Antisense
TACACGGCGTGAGAATGCCCGGAAG 146 643 987 Antisense
GAAGAATCACTTCGTGCACACATCC 662 339 1015 Antisense
GCACACATCCGACGTACTCAGATGG 534 317 1030 Antisense
AAGATATGCCAACGTCATCCAGAAA 593 155 1112 Antisense
GAGGACGATCATGCGGATACCACAA 521 403 1183 Antisense
Sequence Source Affymetrix Proprietary Database