[Home] | [Total List]

[190777_at] ser/thr protein kinase

Description T22B11.3 /REP_DB=WormBase Gene ID /WP=CE17242 /TR=O44562 /GB=AAB94183.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster 6grp_total > 18      4grp_total > 19      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 2.1
(-3)
A 		4.6
(-2.7)
A 		3.1
(-2.9)
A 		48.1
(3)
A 		46
B 12.5
(-2.2)
A 		14.6
(-1.7)
A 		9.1
(-3)
A 		35.1
(3)
A 		26
C 25.8
(1.2)
A 		36.3
(3)
A 		1.8
(-3)
A 		15.4
(-0.6)
A 		35
avr 13.5
(-1.1) 		18.5
(-0.1) 		4.7
(-3) 		32.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 48.2
(3)
A 		30.6
(0.7)
A 		3.5
(-2.8)
A 		5.5
(-2.5)
A 		17.7
(-0.9)
A 		1.8
(-3)
A 		46
B 17.6
(3)
A 		2
(-3)
A 		2.1
(-3)
A 		2.6
(-2.8)
A 		2.9
(-2.7)
A 		2.7
(-2.7)
A 		16
C 31.9
(3)
A 		9.6
(-1.5)
A 		2.4
(-2.9)
A 		16.9
(-0)
A 		2
(-3)
A 		2.6
(-2.9)
A 		30
avr 32.6
(3) 		14.1
(-0.7) 		2.7
(-2.9) 		8.3
(-1.8) 		7.5
(-2) 		2.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		1
(-2.8)
A 		0.8
(-3)
A 		7
(3)
A 		6
B 4
(-0.9)
A 		3.6
(-1.3)
A 		2.1
(-3)
A 		7.5
(3)
A 		5
C 8.5
(1.8)
A 		10.4
(3)
A 		0.6
(-3)
A 		2.6
(-1.8)
A 		10
avr 4.4
(1.3) 		5
(2.1) 		1.2
(-3) 		5.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8.9
(1.9)
A 		10.9
(3)
A 		0.8
(-2.8)
A 		1.4
(-2.4)
A 		5.3
(-0.2)
A 		0.4
(-3)
A 		11
B 6.1
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		1.2
(-2.3)
A 		1
(-2.5)
A 		6
C 11.8
(3)
A 		2.9
(-1.8)
A 		0.6
(-3)
A 		3.4
(-1.5)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		11
avr 8.9
(3) 		4.8
(0) 		0.6
(-3) 		1.8
(-2.1) 		2.4
(-1.7) 		0.8
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11039
Sequence Type Exemplar sequence
Representative Public ID T22B11.3 NCBI
Target Description T22B11.3 /REP_DB=WormBase Gene ID /WP=CE17242 /TR=O44562 /GB=AAB94183.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068213 NCBI Caenorhabditis elegans T22B11.3 (T22B11.3) mRNA, complete cds. 11/11 None
SNAP00000042283 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4679034:4685100:1 11/11 None
GENEFINDER00000042288 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4679034:4685100:1 11/11 None
T22B11.3 ENSEMBL cdna:known chromosome:CEL140:IV:4682944:4685100:1 gene:T22B11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4682949-4685106(+) 100.0 100.0
Public Domain and Genome References
Gene Title ser/thr protein kinase
Ensembl T22B11.3
Entrez Gene 188727 Entrez gene
SwissProt O44562 EMBL-EBI
WormBase CE17242 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94183 Hypothetical protein T22B11.3 [Caenorhabditis elegans] ref|NP_500614.1| T22B11.3 [Caenorhabditis elegans] 0.0
blast CAE58568 Hypothetical protein CBG01733 [Caenorhabditis briggsae] 0.0
blast AAB94184 Hypothetical protein T22B11.4a [Caenorhabditis elegans] ref|NP_001023393.1| T22B11.4a [Caenorhabditis elegans] 0.0
blast AAO91670 Hypothetical protein T22B11.4b [Caenorhabditis elegans] ref|NP_001023394.1| T22B11.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-4
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-4
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:190777_AT
tatggcaagcttcttgtcttccgaaagattagctgcaattgcaattggatgttgtaatgg
agttgaacatttactcaaaaagaacgtcttcccaccacatttatcaacttcaaatgttct
attggctgagagaggaattgttaaaattggaggattcgggctcgccgagcatcatgctct
tgacatgactactgaaagtgccccaaccaaacttcgctggatgccaccagagtatttcaa
acgagatcaaaaaatgatctacaacgagcagacaatgatctggccacttggagtgacact
ttgggagatattttctctaggtggtaccccattcggctcacttcgtcaggctcaaacatt
tatcgacgcgatgcgggatggttcggcacagttggatccgatttcatattgtggtgaagc
tgtgacgcaactgcttgcaacgtgtacatctcacgtgcctgaggcgagaggcgacattcg
aacgattattaaacgacttgagtgcatttctgctgatgctaagactcaaataaacctgtg
ctaccgtgaagacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGCAAGCTTCTTGTCTTCCGAA 406 655 525 Antisense
TTCCCACCACATTTATCAACTTCAA 598 697 613 Antisense
AAATTGGAGGATTCGGGCTCGCCGA 431 115 668 Antisense
CCAACCAAACTTCGCTGGATGCCAC 477 275 727 Antisense
GACAATGATCTGGCCACTTGGAGTG 312 365 795 Antisense
GATATTTTCTCTAGGTGGTACCCCA 525 425 831 Antisense
TCACTTCGTCAGGCTCAAACATTTA 664 625 862 Antisense
TCGACGCGATGCGGGATGGTTCGGC 96 601 887 Antisense
AACTGCTTGCAACGTGTACATCTCA 555 141 953 Antisense
TACATCTCACGTGCCTGAGGCGAGA 236 645 969 Antisense
AAACCTGTGCTACCGTGAAGACTTC 41 127 1056 Antisense
Sequence Source Affymetrix Proprietary Database