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[190775_s_at] Yeast RAD50 like protein

Description C33D9.5 /REP_DB=WormBase Gene ID /WP=CE03046 /TR=Q18378 /GB=CAA92288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast RAD50 like protein
Cluster 6grp_high1_10_10 > 25      4grp_high_8_8 > 09      6grp_total > 25      4grp_total > 23      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 172.9
(3)
P 		124.7
(-1.6)
P 		110.3
(-3)
P 		142.4
(0.1)
P 		63
B 124.8
(0.2)
P 		95.7
(-2.2)
A 		86.5
(-3)
A 		158.3
(3)
P 		72
C 208.7
(3)
P 		115
(-2.2)
P 		101.6
(-3)
A 		158.1
(0.2)
P 		107
avr 168.8
(3) 		111.8
(-1.9) 		99.5
(-3) 		152.9
(1.6) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 185.8
(3)
P 		101.5
(-2.4)
P 		129.9
(-0.6)
P 		163.1
(1.5)
P 		92.2
(-3)
P 		133.2
(-0.4)
P 		94
B 197.8
(1.9)
P 		224.3
(3)
P 		77.8
(-3)
P 		108.7
(-1.7)
M 		82.6
(-2.8)
P 		95.7
(-2.3)
P 		147
C 165.8
(0.4)
P 		219.4
(3)
P 		204.7
(2.3)
P 		104.8
(-2.6)
P 		95.6
(-3)
M 		116.1
(-2)
P 		124
avr 183.1
(3) 		181.7
(2.9) 		137.5
(0.1) 		125.5
(-0.7) 		90.1
(-3) 		115
(-1.4) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 63
(3)
P 		27.1
(-2.1)
P 		28.8
(-1.9)
P 		20.8
(-3)
P 		42
B 39.8
(3)
P 		23.6
(-1.9)
A 		20
(-3)
A 		33.7
(1.2)
P 		20
C 69.1
(3)
P 		33.1
(-2.1)
P 		35.4
(-1.8)
A 		26.7
(-3)
P 		42
avr 57.3
(3) 		27.9
(-2.8) 		28.1
(-2.8) 		27.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 34.2
(-0.2)
P 		36.1
(0.7)
P 		28.3
(-2.8)
P 		41.4
(3)
P 		27.8
(-3)
P 		32.4
(-1)
P 		14
B 68.8
(2.4)
P 		74.7
(3)
P 		18.9
(-3)
P 		28.8
(-1.9)
M 		33.5
(-1.4)
P 		35.7
(-1.2)
P 		56
C 61.5
(2.3)
P 		67
(3)
P 		52.1
(1.1)
P 		21.1
(-3)
P 		30.9
(-1.7)
M 		38.9
(-0.7)
P 		46
avr 54.8
(2.1) 		59.3
(3) 		33.1
(-2.4) 		30.4
(-3) 		30.7
(-2.9) 		35.7
(-1.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190775_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8500
Sequence Type Exemplar sequence
Representative Public ID C33D9.5 NCBI
Target Description C33D9.5 /REP_DB=WormBase Gene ID /WP=CE03046 /TR=Q18378 /GB=CAA92288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast RAD50 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069115 NCBI Caenorhabditis elegans C33D9.5 (C33D9.5) mRNA, complete cds. 11/11 None
SNAP00000033368 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8778703:8780854:-1 11/11 None
GENEFINDER00000033380 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8778703:8780854:-1 11/11 None
C33D9.5 ENSEMBL cdna:known chromosome:CEL140:IV:8778369:8780854:-1 gene:C33D9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8778708-8780860(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast RAD50 like protein
Ensembl C33D9.5
Entrez Gene 177689 Entrez gene
SwissProt Q18378 EMBL-EBI
WormBase CE37808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92288 Hypothetical protein C33D9.5 [Caenorhabditis elegans] ref|NP_501516.2| C33D9.5 [Caenorhabditis elegans] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 3.0E-14
blast XP_657028 myosin heavy chain [Entamoeba histolytica HM-1:IMSS] gb|EAL51645.1| myosin heavy chain [Entamoeba histolytica HM-1:IMSS] 9.0E-14
Sequence
Target Sequence 
>C. ELEGANS:190775_S_AT
aattgttgacgccgcattgaacgctggacccatgtataacctgcaggaaaatctgactaa
tagcgactcctgttgtacatctagaaatgttagcgttgaaaataacgatgaagtgaaggt
tttaaacaagaaggttaagagtctagaagaaagaatggaaaatcttgtatcatgcaatgg
aaatcaagaagcctcccacaagaaacaagtattggaacttcaatctaccgttgcactgaa
tgagaaaagaattgagatgttgatgaagagtatgataagtttaggcgacgttatcacagg
aacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTGACGCCGCATTGAACGCT 369 179 1239 Antisense
CGCATTGAACGCTGGACCCATGTAT 342 253 1251 Antisense
TGGACCCATGTATAACCTGCAGGAA 375 545 1263 Antisense
AAATCTGACTAATAGCGACTCCTGT 393 117 1287 Antisense
TAGCGACTCCTGTTGTACATCTAGA 234 649 1299 Antisense
GGAAAATCTTGTATCATGCAATGGA 74 529 1395 Antisense
GGAAATCAAGAAGCCTCCCACAAGA 317 527 1417 Antisense
AAGCCTCCCACAAGAAACAAGTATT 338 149 1427 Antisense
TGGAACTTCAATCTACCGTTGCACT 576 547 1451 Antisense
CAATCTACCGTTGCACTGAATGAGA 399 179 1459 Antisense
TAGGCGACGTTATCACAGGAACACA 569 651 1520 Antisense
Sequence Source Affymetrix Proprietary Database