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[190770_at] neurokinin receptor like

Description F41E7.3 /REP_DB=WormBase Gene ID /WP=CE03303 /TR=Q20275 /GB=CAA92126.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=neurokinin receptor like
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 26      6grp_total > 15      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 365.6
(3)
P 		150.1
(-2.2)
M 		115.4
(-3)
A 		245.5
(0.1)
A 		250
B 317.4
(3)
P 		102.4
(-2.8)
M 		96.4
(-3)
A 		169.2
(-1)
P 		221
C 315
(3)
P 		161.9
(-0.8)
P 		74.9
(-3)
P 		175.5
(-0.5)
P 		240
avr 332.7
(3) 		138.1
(-1.9) 		95.6
(-3) 		196.7
(-0.4) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 256.1
(3)
P 		210.6
(1.1)
P 		178.5
(-0.2)
P 		111.1
(-3)
P 		184.6
(0)
P 		117.2
(-2.7)
A 		145
B 325.9
(3)
P 		227.6
(0.2)
P 		191.6
(-0.8)
P 		159.4
(-1.7)
P 		134.7
(-2.4)
P 		113.1
(-3)
M 		213
C 247.7
(2.1)
P 		270.3
(3)
P 		144
(-1.8)
P 		162.1
(-1.1)
P 		111.3
(-3)
P 		111.1
(-3)
P 		159
avr 276.6
(3) 		236.2
(1.5) 		171.4
(-0.9) 		144.2
(-1.9) 		143.5
(-1.9) 		113.8
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 133.1
(3)
P 		32.6
(-2.9)
M 		30.2
(-3)
A 		35.9
(-2.7)
A 		103
B 101.2
(3)
P 		25.3
(-2.8)
M 		22.3
(-3)
A 		36.1
(-2)
P 		79
C 104.3
(3)
P 		46.5
(-1.4)
P 		26.1
(-3)
P 		29.6
(-2.7)
P 		78
avr 112.9
(3) 		34.8
(-2.4) 		26.2
(-3) 		33.9
(-2.5) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 47.2
(-0.6)
P 		74.9
(3)
P 		38.9
(-1.6)
P 		28.2
(-3)
P 		55.7
(0.5)
P 		28.5
(-3)
A 		47
B 113.4
(3)
P 		75.8
(-0.2)
P 		46.5
(-2.6)
P 		42.2
(-3)
P 		54.7
(-1.9)
P 		42.2
(-3)
M 		71
C 91.8
(3)
P 		82.5
(2.1)
P 		36.7
(-2.6)
P 		32.6
(-3)
P 		36
(-2.7)
P 		37.2
(-2.5)
P 		59
avr 84.1
(3) 		77.7
(2.2) 		40.7
(-2.2) 		34.3
(-3) 		48.8
(-1.3) 		36
(-2.8) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16735
Sequence Type Exemplar sequence
Representative Public ID F41E7.3 NCBI
Target Description F41E7.3 /REP_DB=WormBase Gene ID /WP=CE03303 /TR=Q20275 /GB=CAA92126.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=neurokinin receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077324 NCBI Caenorhabditis elegans F41E7.3 (F41E7.3) mRNA, complete cds. 11/11 None
SNAP00000016489 ENSEMBL cdna:SNAP chromosome:CEL140:X:10283080:10285243:-1 10/11 None
GENEFINDER00000016501 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10283080:10285624:-1 11/11 None
F41E7.3 ENSEMBL cdna:known chromosome:CEL140:X:10282754:10285663:-1 gene:F41E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10283079-10285405(-) 100.0 100.0
Public Domain and Genome References
Gene Title neurokinin receptor like
Ensembl F41E7.3
Entrez Gene 185623 Entrez gene
SwissProt Q20275 EMBL-EBI
WormBase CE31509 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18646.1.S1_AT similar to Prolactin-releasing peptide receptor (PrRP receptor) (PrRPR) (G-protein coupled receptor GPR10) (hGR3) cfa
DROSOPHILA_2:1624199_AT Neuropeptide F-like Receptor 76F dm
DROSGENOME1:149088_AT Neuropeptide F-like Receptor 76F dm
DROSGENOME1:149087_AT Neuropeptide F-like Receptor 76F dm
HG-U133_PLUS_2:231805_AT G protein-coupled receptor 10 hs
HG-U133B:231805_AT G protein-coupled receptor 10 hs
U133_X3P:HS.248119.0.S2_3P_AT G protein-coupled receptor 10 hs
RAE230A:1369910_AT G protein-coupled receptor 10 rn
RAT230_2:1369910_AT G protein-coupled receptor 10 rn
RG-U34A:S77867_AT G protein-coupled receptor 10 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4983 neuropeptide Y receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92126 Hypothetical protein F41E7.3 [Caenorhabditis elegans] ref|NP_509725.2| F41E7.3 [Caenorhabditis elegans] 0.0
blast CAA92126 Hypothetical protein F41E7.3 [Caenorhabditis elegans] ref|NP_509725.2| F41E7.3 [Caenorhabditis elegans] 1.0E-175
blast CAE70555 Hypothetical protein CBG17200 [Caenorhabditis briggsae] 1.0E-169
blast CAE70555 Hypothetical protein CBG17200 [Caenorhabditis briggsae] 1.0E-164
blast CAE70555 Hypothetical protein CBG17200 [Caenorhabditis briggsae] 1.0E-138
blast EAA00213 ENSANGP00000011806 [Anopheles gambiae str. PEST] ref|XP_320180.1| ENSANGP00000011806 [Anopheles gambiae str. PEST] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.5E-65
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.4E-8
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.6E-39
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.4E-19
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.6E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509725.2 7 40-62,74-96,116-138,158-177,208-230,251-273,288-310
F41E7.3 7 40-62,74-96,116-138,158-177,208-230,251-273,288-310
SNAP00000016489 6 7-29,68-90,110-129,160-182,203-225,240-262
GENEFINDER00000016501 7 40-62,74-96,135-157,177-196,227-249,270-292,307-329
Sequence
Target Sequence 
>C. ELEGANS:190770_AT
tttgccatttgtactcattgccattagttacataaaaatatggttgttcctaaatagccg
tcaaagtatgaccgagagaaaatccgatatcaagcgcaaaaagcgtttactacggatgtt
gattgtcatggtggtcatcttcgcaatttgctggttcccattcaacctcttaaactgtct
ccgagatctcaagttggataatttcatgcgtggctacttcagttttgttttcctttccgt
gcatttgatgagtatgacagctaccgcctggaatccaatcctctacgcattcatgaatga
gaccttccgtgaggagttcgcaaaagttgttccctgcttgtttgcgcgtcgtcctggaac
tggtccaattcgcgtcatcactgaacgcaccgctatgataactaacccgtttcgacgtgc
aaaccgaaaaaaaaaagtggaggaacagcctgttacggtgatttctgaaacagattcaga
gagtccacttcaaactgcagtggagccgcagcgcagtatcgtgtatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCATTTGTACTCATTGCCATT 259 669 678 Antisense
CATGGTGGTCATCTTCGCAATTTGC 616 209 804 Antisense
CGCAATTTGCTGGTTCCCATTCAAC 663 253 819 Antisense
ATTCAACCTCTTAAACTGTCTCCGA 6 13 837 Antisense
TTCATGCGTGGCTACTTCAGTTTTG 608 687 880 Antisense
TTTTCCTTTCCGTGCATTTGATGAG 289 675 905 Antisense
GAGACCTTCCGTGAGGAGTTCGCAA 455 389 976 Antisense
AGTTCGCAAAAGTTGTTCCCTGCTT 388 63 992 Antisense
GATAACTAACCCGTTTCGACGTGCA 166 419 1074 Antisense
GGAACAGCCTGTTACGGTGATTTCT 218 529 1119 Antisense
CCGCAGCGCAGTATCGTGTATCTCG 439 263 1183 Antisense
Sequence Source Affymetrix Proprietary Database