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[190769_at] poly(A) polymerase like

Description F55B12.4 /REP_DB=WormBase Gene ID /WP=CE26815 /TR=Q93795 /GB=CAB02125.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=poly(A) polymerase like
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 354.3
(-0.6)
P 		366.8
(-0.3)
P 		257.4
(-3)
A 		499.9
(3)
P 		243
B 316.9
(-2.4)
P 		307.4
(-3)
P 		310.5
(-2.8)
P 		399.3
(3)
P 		92
C 407.2
(-1.7)
P 		342.3
(-3)
P 		357.8
(-2.7)
P 		647
(3)
P 		305
avr 359.5
(-1.5) 		338.8
(-2.1) 		308.6
(-3) 		515.4
(3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 299
(-3)
P 		339
(-2)
P 		406.4
(-0.4)
P 		400.7
(-0.6)
P 		359.1
(-1.6)
P 		549
(3)
P 		250
B 314.3
(-1.1)
P 		253.1
(-3)
P 		426.1
(2.3)
P 		387.1
(1.1)
P 		449.4
(3)
P 		441.4
(2.8)
P 		196
C 355.8
(-0.4)
P 		230.1
(-3)
P 		311
(-1.3)
P 		493.7
(2.4)
P 		348
(-0.6)
P 		523.1
(3)
P 		293
avr 323
(-1.7) 		274.1
(-3) 		381.2
(-0.2) 		427.2
(1) 		385.5
(-0.1) 		504.5
(3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 129
(3)
P 		79.6
(-1.8)
P 		67.3
(-3)
A 		73.2
(-2.4)
P 		62
B 101.1
(3)
P 		75.9
(-2.2)
P 		72
(-3)
P 		85.1
(-0.3)
P 		29
C 134.8
(3)
P 		98.4
(-3)
P 		124.7
(1.3)
P 		109.1
(-1.2)
P 		36
avr 121.6
(3) 		84.6
(-3) 		88
(-2.4) 		89.1
(-2.3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 55.1
(-3)
P 		120.5
(2)
P 		88.5
(-0.5)
P 		101.6
(0.5)
P 		108.4
(1.1)
P 		133.7
(3)
P 		79
B 109.4
(-1.5)
P 		84.2
(-3)
P 		103.5
(-1.8)
P 		102.5
(-1.9)
P 		182.6
(3)
P 		164.6
(1.9)
P 		98
C 131.9
(0.5)
P 		70.2
(-3)
P 		79.2
(-2.5)
P 		99.3
(-1.3)
P 		112.6
(-0.6)
P 		175.1
(3)
P 		105
avr 98.8
(-2.3) 		91.6
(-2.9) 		90.4
(-3) 		101.1
(-2) 		134.5
(0.9) 		157.8
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13522
Sequence Type Exemplar sequence
Representative Public ID F55B12.4 NCBI
Target Description F55B12.4 /REP_DB=WormBase Gene ID /WP=CE26815 /TR=Q93795 /GB=CAB02125.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=poly(A) polymerase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028805 NCBI Caenorhabditis elegans F55B12.4 (F55B12.4) mRNA, complete cds. 11/11 None
SNAP00000009641 ENSEMBL cdna:SNAP chromosome:CEL140:V:13825338:13827746:1 11/11 None
GENEFINDER00000009649 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13825285:13827746:1 11/11 None
F55B12.4.1 ENSEMBL cdna:known chromosome:CEL140:V:13825641:13827801:1 gene:F55B12.4 11/11 None
F55B12.4.2 ENSEMBL cdna:known chromosome:CEL140:V:13825703:13827801:1 gene:F55B12.4 11/11 None
F55B12.4.3 ENSEMBL cdna:known chromosome:CEL140:V:13825715:13827801:1 gene:F55B12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13825785-13827746(+) 100.0 100.0
Public Domain and Genome References
Gene Title poly(A) polymerase like
Ensembl F55B12.4
Entrez Gene 3565786 Entrez gene
SwissProt Q93795 EMBL-EBI
WormBase CE26815 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604710_AT similar to tRNA nucleotidyl transferase, CCA-adding, 1 isoform 2 cfa
CANINE_2:CFA.2089.1.A1_AT similar to tRNA nucleotidyl transferase, CCA-adding, 1 isoform 2 cfa
CANINE_2:CFAAFFX.9950.1.S1_S_AT similar to tRNA nucleotidyl transferase, CCA-adding, 1 isoform 2 cfa
DROSOPHILA_2:1631223_AT dm
DROSGENOME1:153297_AT dm
HG-U133B:223814_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133_PLUS_2:223814_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HU35KSUBC:RC_AA053015_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HU35KSUBD:RC_N91246_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:G13528761_3P_X_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:G13528761_3P_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:G13528761_3P_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:HS2.102897.1.S1_3P_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:HS.102897.0.S2_3P_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:223814_3P_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133_PLUS_2:1552625_A_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133_PLUS_2:222754_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133B:222754_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95B:56173_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95E:75061_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95E:75691_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95E:83497_AT tRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133_PLUS_2:243236_AT TRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U133B:243236_AT TRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95B:43619_AT TRNA nucleotidyl transferase, CCA-adding, 1 hs
HG-U95C:66587_AT TRNA nucleotidyl transferase, CCA-adding, 1 hs
U133_X3P:HS.125440.0.A1_3P_AT TRNA nucleotidyl transferase, CCA-adding, 1 hs
MOUSE430A_2:1425562_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MOE430A:1425562_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MOUSE430_2:1425562_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MU11KSUBA:AA408384_RC_S_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MG-U74AV2:160847_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MOE430A:1425561_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MOUSE430A_2:1425561_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MOUSE430_2:1425561_AT tRNA nucleotidyl transferase, CCA-adding, 1 mm
MU19KSUBA:TC16543_AT TRNA nucleotidyl transferase, CCA-adding, 1, mRNA (cDNA clone MGC:25478 IMAGE:4486420) mm
RG-U34B:RC_AI012382_AT tRNA nucleotidyl transferase, CCA-adding, 1 (predicted) rn
RAE230B:1383144_AT tRNA nucleotidyl transferase, CCA-adding, 1 (predicted) rn
RAT230_2:1383144_AT tRNA nucleotidyl transferase, CCA-adding, 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6396 RNA processing inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02125 Hypothetical protein F55B12.4 [Caenorhabditis elegans] ref|NP_001023976.1| F55B12.4 [Caenorhabditis elegans] 0.0
blast CAE66231 Hypothetical protein CBG11474 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002646 EMBL-EBI Polynucleotide adenylyltransferase 2.9E-70
Pfam IPR002646 EMBL-EBI Polynucleotide adenylyltransferase 2.9E-70
Pfam IPR002646 EMBL-EBI Polynucleotide adenylyltransferase 2.9E-70
Sequence
Target Sequence 
>C. ELEGANS:190769_AT
atcgccgaatttcatcgtattacgaagctctcgaacgatgaacgtctcctcggtgaattc
attcttagtgaacgacaatctgctgttgagaatttaaaaaacgatgactggtggattgat
agaattgttgatttggaagtacgtcctggtcacgagaatcaacaggatcgacttcgtcag
cgacttgtccaacttgccaaaagtgtgctcgctgatgaagaaagaattcaaatgattgag
aattttgaagctcccaagtttccaataactggtcgtgatctgatggaagctggtgttcga
aaaggtcctcacgtccgaaatgtactctattatctttacaatttatggaaagaatcaaga
ttcactgaaagcaaatattctttattggagcgtgccaaagactcggacattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCCGAATTTCATCGTATTACGA 631 37 877 Antisense
GCTCTCGAACGATGAACGTCTCCTC 523 297 903 Antisense
AACGTCTCCTCGGTGAATTCATTCT 181 145 917 Antisense
GAAGTACGTCCTGGTCACGAGAATC 256 337 1012 Antisense
ACAGGATCGACTTCGTCAGCGACTT 371 105 1038 Antisense
GCGACTTGTCCAACTTGCCAAAAGT 329 287 1056 Antisense
CTTGCCAAAAGTGTGCTCGCTGATG 516 219 1069 Antisense
GAATTTTGAAGCTCCCAAGTTTCCA 247 321 1116 Antisense
AAGCTGGTGTTCGAAAAGGTCCTCA 653 149 1163 Antisense
GTCCTCACGTCCGAAATGTACTCTA 42 477 1181 Antisense
AGCGTGCCAAAGACTCGGACATTCC 383 81 1265 Antisense
Sequence Source Affymetrix Proprietary Database