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[190768_s_at]

Description ZK1128.6 /REP_DB=WormBase Gene ID /WP=CE24716 /TR=Q09647 /GB=CAA87425.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tubulin tyrosine ligase
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 75      6grp_total > 29      4grp_total > 55      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 680
1 2 3 4 range
A 1081
(3)
P 		707.9
(-0.3)
P 		564.5
(-1.6)
P 		400.9
(-3)
P 		680
B 1044.1
(3)
P 		576.5
(-1.4)
P 		592.3
(-1.3)
P 		412.6
(-3)
P 		632
C 1021
(3)
P 		535.3
(-2.7)
P 		658.6
(-1.3)
P 		510.6
(-3)
P 		510
avr 1048.7
(3) 		606.6
(-1.4) 		605.1
(-1.4) 		441.4
(-3) 		607

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 763.4
(-3)
P 		896.1
(0.9)
P 		943.7
(2.2)
P 		848.4
(-0.5)
P 		931.7
(1.9)
P 		969.5
(3)
P 		206
B 1084.1
(3)
P 		863.4
(-0.8)
P 		878.2
(-0.6)
P 		740.1
(-3)
P 		1009.2
(1.7)
P 		838.1
(-1.3)
P 		344
C 940.2
(0.8)
P 		842.4
(-2.8)
P 		997.9
(3)
P 		837.6
(-3)
P 		895.1
(-0.8)
P 		943.8
(1)
P 		160
avr 929.2
(2.3) 		867.3
(-0.4) 		939.9
(2.8) 		808.7
(-3) 		945.3
(3) 		917.1
(1.8) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 393.6
(3)
P 		153.7
(-1.3)
P 		147.6
(-1.4)
P 		58.7
(-3)
P 		335
B 333
(3)
P 		142.4
(-1.7)
P 		137.2
(-1.8)
P 		87.9
(-3)
P 		245
C 338
(3)
P 		153.9
(-1.4)
P 		229.6
(0.4)
P 		86.1
(-3)
P 		252
avr 354.9
(3) 		150
(-1.4) 		171.5
(-1) 		77.6
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 140.7
(-3)
P 		318.7
(3)
P 		205.5
(-0.8)
P 		215.2
(-0.5)
P 		281.1
(1.7)
P 		236
(0.2)
P 		178
B 377.2
(2.1)
P 		287.4
(-0.4)
P 		213.2
(-2.5)
P 		196
(-3)
P 		410
(3)
P 		312.5
(0.3)
P 		214
C 348.5
(3)
P 		257
(-0)
P 		254
(-0.1)
P 		168.4
(-3)
P 		289.6
(1)
P 		316
(1.9)
P 		180
avr 288.8
(1.3) 		287.7
(1.2) 		224.2
(-1.6) 		193.2
(-3) 		326.9
(3) 		288.2
(1.3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190768_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7119
Sequence Type Exemplar sequence
Representative Public ID ZK1128.6 NCBI
Target Description ZK1128.6 /REP_DB=WormBase Gene ID /WP=CE24716 /TR=Q09647 /GB=CAA87425.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tubulin tyrosine ligase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027814(11), NM_001027815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027814 NCBI Caenorhabditis elegans ZK1128.6a (ZK1128.6) mRNA, complete cds. 11/11 None
NM_001027815 NCBI Caenorhabditis elegans ZK1128.6b (ZK1128.6) mRNA, complete cds. 11/11 None
SNAP00000023590 ENSEMBL cdna:SNAP chromosome:CEL140:III:10124071:10132112:1 11/11 None
GENEFINDER00000023593 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10124071:10132112:1 11/11 None
ZK1128.6a ENSEMBL cdna:known chromosome:CEL140:III:10124071:10132613:1 gene:ZK1128.6 11/11 None
ZK1128.6b.2 ENSEMBL cdna:known chromosome:CEL140:III:10127676:10132112:1 gene:ZK1128.6 11/11 None
ZK1128.6b.1 ENSEMBL cdna:known chromosome:CEL140:III:10127682:10132112:1 gene:ZK1128.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10123829-10132108(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1128.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87425 Hypothetical protein ZK1128.6a [Caenorhabditis elegans] ref|NP_001022985.1| ZK1128.6a [Caenorhabditis elegans] 0.0
blast CAI46580 Hypothetical protein ZK1128.6b [Caenorhabditis elegans] ref|NP_001022986.1| ZK1128.6b [Caenorhabditis elegans] 0.0
blast CAE65034 Hypothetical protein CBG09874 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 2.1E-70
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.5E-48
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190768_S_AT
gagcacatgtcacgattcttggaacaggaattcatttgttatgaactttttggaattgat
attatattggatgaagactataaaccgtggttgttggaagtcaatatttcaccttctctt
cattcgggaactccacttgatgtttctgtgaaggctccacttgcaaaggatgtactcaat
ttggcaggagtatatgttcctccaagtttcgacaagctcagtgatgcggattatagcacc
cgtccccgtaatggaaggaagaatcgtgaacaattgatcaaagaagcttcatgggttgct
gcttataaagatcaacttggagtaatcgataatcgaattttcaaacggctcaccccagaa
gatactcgagctttggttgaatttgaagacgaacttgaacgaattggagattttaaattg
gtcttcccaacagctcacacttcacattatcaaaaatatttcgctgaaactatctacatg
aacattctgctccaacaatggcaaattgctcaagaagatgatcgttcaattggaatcaac
cgcctcgaacagctttgccgtcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACATGTCACGATTCTTGGAAC 232 391 1456 Antisense
AAGTCAATATTTCACCTTCTCTTCA 508 157 1553 Antisense
CGGGAACTCCACTTGATGTTTCTGT 706 243 1580 Antisense
GTTTCTGTGAAGGCTCCACTTGCAA 280 451 1597 Antisense
GTGATGCGGATTATAGCACCCGTCC 391 483 1676 Antisense
GGCTCACCCCAGAAGATACTCGAGC 226 539 1802 Antisense
TAAATTGGTCTTCCCAACAGCTCAC 365 641 1869 Antisense
AACAGCTCACACTTCACATTATCAA 195 137 1884 Antisense
ATCTACATGAACATTCTGCTCCAAC 92 33 1927 Antisense
GTTCAATTGGAATCAACCGCCTCGA 537 445 1979 Antisense
CCTCGAACAGCTTTGCCGTCAAAAA 132 265 1998 Antisense
Sequence Source Affymetrix Proprietary Database