[Home] | [Total List]

[190765_at] Zinc finger, C2H2 type

Description T07G12.10 /REP_DB=WormBase Gene ID /WP=CE21165 /TR=O18067 /GB=CAB05280.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 87      4grp_total > 16      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 6.6
(-3)
A 		70.7
(1.6)
A 		88.1
(2.8)
A 		91.1
(3)
A 		85
B 26.5
(-3)
A 		35.9
(-2.3)
A 		37.4
(-2.2)
A 		106.1
(3)
P 		80
C 37.6
(-2.1)
A 		15.8
(-3)
A 		54.8
(-1.4)
P 		159.8
(3)
P 		144
avr 23.6
(-3) 		40.8
(-1.9) 		60.1
(-0.7) 		119
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 59
(-2.5)
A 		38.7
(-3)
A 		52.1
(-2.6)
A 		78.9
(-1.9)
A 		200.3
(1.4)
P 		261.2
(3)
P 		223
B 41.1
(-2.8)
A 		30.2
(-3)
A 		63.8
(-2.4)
A 		74
(-2.2)
P 		169.2
(-0.5)
P 		367.9
(3)
P 		338
C 5.3
(-3)
A 		64.9
(-1.9)
A 		75.5
(-1.7)
M 		55.6
(-2.1)
A 		155.9
(-0.3)
P 		338.3
(3)
P 		333
avr 35.1
(-3) 		44.6
(-2.8) 		63.8
(-2.4) 		69.5
(-2.3) 		175.1
(-0.1) 		322.5
(3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.4
(-3)
A 		15.3
(0.8)
A 		23
(3)
A 		13.3
(0.2)
A 		21
B 8.4
(-3)
A 		8.9
(-2.8)
A 		8.7
(-2.9)
A 		22.6
(3)
P 		14
C 12.4
(-0.9)
A 		4.6
(-3)
A 		19.1
(0.9)
P 		27
(3)
P 		22
avr 7.7
(-3) 		9.6
(-2.1) 		16.9
(1.2) 		21
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 10.9
(-3)
A 		13.8
(-2.7)
A 		11.4
(-2.9)
A 		20
(-2)
A 		60.4
(2.6)
P 		63.6
(3)
P 		53
B 14.3
(-2.8)
A 		10.1
(-3)
A 		15.5
(-2.7)
A 		19.6
(-2.6)
P 		68.8
(-0.2)
P 		137.2
(3)
P 		127
C 2
(-3)
A 		19.8
(-2)
A 		19.2
(-2.1)
M 		11.2
(-2.5)
A 		50.5
(-0.4)
P 		113.2
(3)
P 		111
avr 9.1
(-3) 		14.6
(-2.7) 		15.4
(-2.6) 		16.9
(-2.5) 		59.9
(0.2) 		104.7
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10338
Sequence Type Exemplar sequence
Representative Public ID T07G12.10 NCBI
Target Description T07G12.10 /REP_DB=WormBase Gene ID /WP=CE21165 /TR=O18067 /GB=CAB05280.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069551 NCBI Caenorhabditis elegans T07G12.10 (T07G12.10) mRNA, complete cds. 11/11 None
SNAP00000026262 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10555621:10557772:1 9/11 None
GENEFINDER00000026270 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10555621:10560899:1 11/11 None
T07G12.10.1 ENSEMBL cdna:known chromosome:CEL140:IV:10555619:10558128:1 gene:T07G12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10554332-10558002(+) 98.28 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol zim-2
Ensembl T07G12.10
Entrez Gene 177948 Entrez gene
SwissProt O18067 EMBL-EBI
WormBase CE29521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05280 Hypothetical protein T07G12.10 [Caenorhabditis elegans] ref|NP_501952.1| T07G12.10 [Caenorhabditis elegans] 0.0
blast CAB05278 Hypothetical protein T07G12.11 [Caenorhabditis elegans] ref|NP_501953.1| T07G12.11 [Caenorhabditis elegans] 0.0
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 0.0
blast CAB05277 Hypothetical protein T07G12.6 [Caenorhabditis elegans] 1.0E-176
Sequence
Target Sequence 
>C. ELEGANS:190765_AT
tatcagtgatcaacctccagtcatagaactgtcaagagatcataacatcgaaggagtgtt
tcaaaataatttcgttgacgtcgaggatactatgttgattgaaaactatgaagaggtggg
agccgaaatcgttgaagtagatgatcaagatcagtatgaggttatcagtgaagatgatga
aaaggaaaagagcccgattccttcgaaaaatcgagtttcatttgcatttccacttgttca
aagtcccaacaaacaaaaagaagaaatgaataaagttcataacattaaatgccattttga
taactgtaatcgaaaaattcactggaagattcgttatggaaaacttagactggtcgatca
tgcactatcacatcaagaggaaaaatccattgactgccagaaatgtgaatattcatgcca
gacaactcgacaaatgcgttatcactacaaaaagattcatgcaaatctgaaaatggaagg
cttcggaattctcaacattcctcttcaaaataccaaattctcagatgtatggaataaatg
ttttggagatcaactgaaaacgatcggacccgttagaaaagctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAGTGATCAACCTCCAGTCATA 54 659 1890 Antisense
GTTGACGTCGAGGATACTATGTTGA 202 437 1963 Antisense
GAAGAGGTGGGAGCCGAAATCGTTG 624 223 1999 Antisense
AATCGAGTTTCATTTGCATTTCCAC 213 169 2098 Antisense
GCATTTCCACTTGTTCAAAGTCCCA 74 309 2113 Antisense
TAGACTGGTCGATCATGCACTATCA 266 653 2235 Antisense
GAGGAAAAATCCATTGACTGCCAGA 226 405 2266 Antisense
GAATATTCATGCCAGACAACTCGAC 152 327 2296 Antisense
GACAACTCGACAAATGCGTTATCAC 532 365 2310 Antisense
TTCTCAACATTCCTCTTCAAAATAC 370 691 2378 Antisense
CGATCGGACCCGTTAGAAAAGCTGA 361 247 2450 Antisense
Sequence Source Affymetrix Proprietary Database