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[190763_at]

Description F17C11.1 /REP_DB=WormBase Gene ID /WP=CE20688 /TR=Q19521 /GB=CAA96633.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=bZIP DNA binding domain
Cluster 4grp_high_8_8 > 26      6grp_total > 07      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 177.4
(2.9)
P 		147
(0.8)
A 		93.8
(-3)
P 		178.7
(3)
P 		85
B 198.4
(3)
P 		146.6
(-1.1)
P 		149.1
(-0.9)
P 		123.4
(-3)
P 		75
C 201.9
(3)
P 		171.2
(-0)
P 		141
(-3)
P 		157.4
(-1.4)
M 		61
avr 192.6
(3) 		154.9
(-0.5) 		128
(-3) 		153.2
(-0.7) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 204.7
(3)
A 		139.1
(0.2)
P 		117.6
(-0.7)
A 		73.7
(-2.6)
P 		108.8
(-1.1)
A 		64.5
(-3)
A 		140
B 185.3
(3)
P 		134.5
(0.8)
P 		115.2
(-0.1)
A 		136.7
(0.9)
A 		48.8
(-3)
A 		98.9
(-0.8)
A 		137
C 260.7
(3)
P 		124.7
(-1.5)
P 		80.1
(-3)
A 		115.7
(-1.8)
A 		92.1
(-2.6)
P 		103.4
(-2.2)
A 		181
avr 216.9
(3) 		132.8
(-0.8) 		104.3
(-2.1) 		108.7
(-1.9) 		83.2
(-3) 		88.9
(-2.7) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 64.6
(3)
P 		31.9
(-1.9)
A 		24.5
(-3)
P 		26.2
(-2.7)
P 		40
B 63.3
(3)
P 		36.2
(-1.4)
P 		34.6
(-1.7)
P 		26.3
(-3)
P 		37
C 66.8
(3)
P 		49.2
(0.4)
P 		49.1
(0.4)
P 		26.5
(-3)
M 		40
avr 64.9
(3) 		39.1
(-1) 		36.1
(-1.5) 		26.3
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 37.7
(0.9)
A 		49.5
(3)
P 		25.6
(-1.2)
A 		18.7
(-2.5)
P 		32.8
(0)
A 		15.7
(-3)
A 		34
B 64.5
(3)
P 		44.8
(0.4)
P 		28
(-1.9)
A 		36.2
(-0.8)
A 		19.8
(-3)
A 		36.9
(-0.7)
A 		45
C 96.6
(3)
P 		38.1
(-1.6)
P 		20.4
(-3)
A 		23.3
(-2.8)
A 		29.8
(-2.3)
P 		34.6
(-1.9)
A 		76
avr 66.3
(3) 		44.1
(-0.2) 		24.7
(-3) 		26.1
(-2.8) 		27.5
(-2.6) 		29.1
(-2.4) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14247
Sequence Type Exemplar sequence
Representative Public ID F17C11.1 NCBI
Target Description F17C11.1 /REP_DB=WormBase Gene ID /WP=CE20688 /TR=Q19521 /GB=CAA96633.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=bZIP DNA binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073390
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033894 ENSEMBL cdna:SNAP chromosome:CEL140:V:10945092:10946372:1 11/11 None
GENEFINDER00000033908 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10945059:10946372:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10942260-10946372(+) 98.62 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE75128 Hypothetical protein CBG23056 [Caenorhabditis briggsae] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:190763_AT
ccattcaccgccactgaggaaatctatcctgatattccgttcattgattctatgattgct
gaagttcgccaagaaataatcaacgaagatattccagttccatctccatcaacatcttca
gatatctcttcggtgagcaggaagtcatcagcttcatcttcttcttcacttcgagacgtc
tttgtttctcccggacaaactcttgttatccgaggtgacgatggtcaagaatataaagtc
attgtcgaacgtgttgaaggaagtgaagctcatgccactccagctttgacgaaaagaaaa
ttatcagacgatagtgatattgccccaaaaagagcccgagcaccacctgtctcactagtc
aatttgtcggatgaagagatcgctgagcgaaagaaacaacaaaaccgtgcagctgcactc
cgataccgtcaaaaacttcgtgaaagccgtgtaatgtcagtttcagtgaaggagacactc
actcaacgaaatgcttaccttcgtgatgaagctgagcgtctttccaaagagtgcgaagtc
atccgtcggctaattttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCACCGCCACTGAGGAAATCT 572 269 796 Antisense
ATCTATCCTGATATTCCGTTCATTG 433 31 817 Antisense
TTCACTTCGAGACGTCTTTGTTTCT 686 683 960 Antisense
TCTCCCGGACAAACTCTTGTTATCC 183 609 982 Antisense
GGAAGTGAAGCTCATGCCACTCCAG 549 531 1054 Antisense
ATATTGCCCCAAAAAGAGCCCGAGC 568 15 1112 Antisense
CCACCTGTCTCACTAGTCAATTTGT 585 273 1138 Antisense
GCACTCCGATACCGTCAAAAACTTC 529 313 1210 Antisense
GACACTCACTCAACGAAATGCTTAC 391 367 1269 Antisense
TGAAGCTGAGCGTCTTTCCAAAGAG 332 573 1302 Antisense
GAAGTCATCCGTCGGCTAATTTTCG 47 337 1330 Antisense
Sequence Source Affymetrix Proprietary Database