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[190762_at]

Description T05H4.13 /REP_DB=WormBase Gene ID /WP=CE27441 /TR=O16518 /GB=AAB66022.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 10      6grp_total > 35      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 34      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 958
1 2 3 4 range
A 768.6
(-2.1)
P 		635.2
(-3)
P 		772.7
(-2)
P 		1490.8
(3)
P 		856
B 825.4
(-1.9)
P 		649.2
(-3)
P 		656.8
(-3)
P 		1593
(3)
P 		944
C 769.8
(-2.1)
P 		683.9
(-2.7)
P 		647.8
(-3)
P 		1474.9
(3)
P 		827
avr 787.9
(-2.1) 		656.1
(-3) 		692.4
(-2.7) 		1519.6
(3) 		864

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1118
1 2 3 4 5 6 range
A 1633.3
(1.8)
P 		1796
(3)
P 		1355.4
(-0.3)
P 		1185.8
(-1.6)
P 		1002.7
(-3)
P 		1420.8
(0.2)
P 		793
B 1580.2
(3)
P 		1301.5
(0.8)
P 		1559.1
(2.8)
P 		882.6
(-2.5)
P 		821.6
(-3)
P 		1222
(0.2)
P 		759
C 1939.2
(3)
P 		1462.2
(0.4)
P 		1581.3
(1)
P 		858.7
(-3)
P 		897.6
(-2.8)
P 		1386.3
(-0.1)
P 		1081
avr 1717.6
(3) 		1519.9
(1.5) 		1498.6
(1.4) 		975.7
(-2.5) 		907.3
(-3) 		1343
(0.2) 		810
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 279.8
(3)
P 		137.9
(-3)
P 		202
(-0.3)
P 		218.2
(0.4)
P 		142
B 263.2
(0.6)
P 		160.3
(-2.7)
P 		152.2
(-3)
P 		339.5
(3)
P 		187
C 254.8
(3)
P 		196.6
(-3)
P 		225.8
(0)
P 		248.7
(2.4)
P 		58
avr 265.9
(2.8) 		164.9
(-3) 		193.3
(-1.4) 		268.8
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 301.1
(-2.9)
P 		638.7
(3)
P 		295.2
(-3)
P 		300.7
(-2.9)
P 		302.6
(-2.9)
P 		345.9
(-2.1)
P 		344
B 549.8
(3)
P 		433.2
(0.8)
P 		378.6
(-0.3)
P 		233.8
(-3)
P 		333.8
(-1.1)
P 		455.7
(1.2)
P 		316
C 718.8
(3)
P 		446.2
(0)
P 		402.5
(-0.5)
P 		172.7
(-3)
P 		290.5
(-1.7)
P 		464.1
(0.2)
P 		546
avr 523.2
(3) 		506
(2.6) 		358.8
(-0.4) 		235.7
(-3) 		309
(-1.5) 		421.9
(0.9) 		288
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11387
Sequence Type Exemplar sequence
Representative Public ID T05H4.13 NCBI
Target Description T05H4.13 /REP_DB=WormBase Gene ID /WP=CE27441 /TR=O16518 /GB=AAB66022.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171472(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171472 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-4) (alh-4) mRNA, complete cds. 9/11 A 
T05H4.13b ENSEMBL cdna:known chromosome:CEL140:V:6429816:6432506:-1 gene:T05H4.13 9/11 A 
T05H4.13c.2 ENSEMBL cdna:known chromosome:CEL140:V:6429817:6432510:-1 gene:T05H4.13 11/11 None
T05H4.13c.3 ENSEMBL cdna:known chromosome:CEL140:V:6429817:6432510:-1 gene:T05H4.13 11/11 None
T05H4.13c.1 ENSEMBL cdna:known chromosome:CEL140:V:6429817:6432508:-1 gene:T05H4.13 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171471 8/11 Cross Hyb Matching Probes A 
NM_072233 8/11 Cross Hyb Matching Probes A 
SNAP00000040306 8/11 Cross Hyb Matching Probes None
GENEFINDER00000040327 8/11 Cross Hyb Matching Probes None
T05H4.13a 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179026 3 1 NM_171472 174469_at (11), 190762_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6430192-6432506(-) 100.0 100.0
Public Domain and Genome References
Ensembl T05H4.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741554 ALdehyde deHydrogenase family member (alh-4) [Caenorhabditis elegans] gb|AAM45357.1| Aldehyde dehydrogenase protein 4, isoform b [Caenorhabditis elegans] 0.0
blast NP_504634 ALdehyde deHydrogenase family member (alh-4) [Caenorhabditis elegans] gb|AAO26003.1| Aldehyde dehydrogenase protein 4, isoform c [Caenorhabditis elegans] 0.0
blast NP_741553 ALdehyde deHydrogenase family member (alh-4) [Caenorhabditis elegans] gb|AAB66022.2| Aldehyde dehydrogenase protein 4, isoform a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 2.2E-35
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 2.4E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741554.1 1 469-491
T05H4.13b 1 469-491
T05H4.13c.2 1 463-485
T05H4.13c.3 1 463-485
T05H4.13c.1 1 463-485
Sequence
Target Sequence 
>C. ELEGANS:190762_AT
gaaatctgatccattcatgcatgatgagatttttggtccagtcctgcccatcatcactgt
ccagtctttctcggagtcgcttgagtacattgctgatggagagaagcctctggctgctta
cattttcacaagaaatgaagctaaagttaaacgccttttgaatgagactagcagtggtgg
tgtgactgttaacgatgtgttgatgcacattactgttgatactctcccgttcggaggagt
aggtgtctctggaatgggacgttaccgtggaaagtatggatttgacacattcacccatga
aaagtctgtgcttcacagaggattcttcggagaatctcttttagcagctcgttacccgcc
actaagccaacaaaagctcgatcaaatgcgacgcctcacgggaaaacgaatctctctgaa
tctgatgaatgttgcgactcttcctatcgtaatggcctcattcgtttttggaatgctctt
ccagctaactagtaccaattcgataacaaataaatacagaaaaaataatactagtttcag
ttcattttccgcttctcggcataaaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCTGATCCATTCATGCATGAT 156 363 987 Antisense
ATGAGATTTTTGGTCCAGTCCTGCC 230 45 1010 Antisense
AGTCTTTCTCGGAGTCGCTTGAGTA 617 61 1049 Antisense
GAGTCGCTTGAGTACATTGCTGATG 207 401 1060 Antisense
GAGAAGCCTCTGGCTGCTTACATTT 562 391 1087 Antisense
GCACATTACTGTTGATACTCTCCCG 159 317 1191 Antisense
GATACTCTCCCGTTCGGAGGAGTAG 322 391 1204 Antisense
GGTGTCTCTGGAATGGGACGTTACC 529 493 1228 Antisense
TGCTCTTCCAGCTAACTAGTACCAA 680 579 1460 Antisense
ACTAGTTTCAGTTCATTTTCCGCTT 492 101 1516 Antisense
TTTTCCGCTTCTCGGCATAAAATCG 691 669 1531 Antisense
Sequence Source Affymetrix Proprietary Database