[Home] | [Total List]

[190757_s_at]

Description F46E10.10 /REP_DB=WormBase Gene ID /WP=CE20820 /TR=Q9UAV5 /GB=AAD14720.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lactate dehydrogenase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 08      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16295
1 2 3 4 range
A 23110.4
(2.6)
P 		23926.7
(3)
P 		22791.2
(2.5)
P 		10464.3
(-3)
P 		13462
B 24906.6
(3)
P 		21586.2
(1.8)
P 		20873.1
(1.5)
P 		8863.8
(-3)
P 		16043
C 22497.8
(3)
P 		20844
(2.3)
P 		18582.2
(1.3)
P 		8612.1
(-3)
P 		13886
avr 23504.9
(3) 		22119
(2.4) 		20748.8
(1.8) 		9313.4
(-3) 		14192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9642
1 2 3 4 5 6 range
A 18248.6
(-1.4)
P 		18393.1
(-1.2)
P 		22976.5
(3)
P 		18808.3
(-0.8)
P 		16473.9
(-3)
P 		17551.8
(-2)
P 		6503
B 16958.2
(-1)
P 		16897.1
(-1)
P 		23073.8
(3)
P 		18470.1
(0)
P 		14604
(-2.5)
P 		13828.5
(-3)
P 		9245
C 16964.4
(-1.3)
P 		17792.8
(-0.8)
P 		23470.4
(3)
P 		18827.1
(-0.1)
P 		17473.5
(-1)
P 		14402.8
(-3)
P 		9068
avr 17390.4
(-1.4) 		17694.3
(-1.2) 		23173.6
(3) 		18701.8
(-0.4) 		16183.8
(-2.3) 		15261
(-3) 		7913
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6962
1 2 3 4 range
A 8414.5
(3)
P 		5193.8
(0.2)
P 		5958.1
(0.9)
P 		1531.8
(-3)
P 		6883
B 7942.5
(3)
P 		5331.3
(0.4)
P 		4836.8
(-0.1)
P 		1888.9
(-3)
P 		6054
C 7447.4
(3)
P 		5992.8
(1.5)
P 		6476.5
(2)
P 		1452.1
(-3)
P 		5995
avr 7934.8
(3) 		5506
(0.7) 		5757.1
(0.9) 		1624.3
(-3) 		6311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3178
1 2 3 4 5 6 range
A 3364
(-3)
P 		6541.5
(3)
P 		5003.8
(0.1)
P 		4770.2
(-0.3)
P 		4971.1
(0)
P 		4273.3
(-1.3)
P 		3178
B 5900.6
(2.8)
P 		5624.3
(1.2)
P 		5603
(1.1)
P 		4892.1
(-3)
P 		5933.4
(3)
P 		5156.6
(-1.5)
P 		1041
C 6288
(3)
P 		5429.1
(0.9)
P 		5973.6
(2.2)
P 		3786.2
(-3)
P 		5654.2
(1.5)
P 		4821.4
(-0.5)
P 		2502
avr 5184.2
(0) 		5865
(3) 		5526.8
(1.5) 		4482.8
(-3) 		5519.6
(1.5) 		4750.4
(-1.8) 		1382
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190757_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11344
Sequence Type Exemplar sequence
Representative Public ID F46E10.10 NCBI
Target Description F46E10.10 /REP_DB=WormBase Gene ID /WP=CE20820 /TR=Q9UAV5 /GB=AAD14720.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lactate dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182354(11), NM_182353(11), NM_072255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182354 NCBI Caenorhabditis elegans F46E10.10c (F46E10.10) mRNA, complete cds. 11/11 None
NM_182353 NCBI Caenorhabditis elegans F46E10.10b (F46E10.10) mRNA, complete cds. 11/11 None
NM_072255 NCBI Caenorhabditis elegans F46E10.10a (F46E10.10) mRNA, complete cds. 11/11 None
SNAP00000002132 ENSEMBL cdna:SNAP chromosome:CEL140:V:6518014:6519119:-1 11/11 None
GENEFINDER00000002144 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6518014:6519119:-1 11/11 None
F46E10.10c.2 ENSEMBL cdna:known chromosome:CEL140:V:6517870:6518696:-1 gene:F46E10.10 11/11 None
F46E10.10c.1 ENSEMBL cdna:known chromosome:CEL140:V:6517870:6518831:-1 gene:F46E10.10 11/11 None
F46E10.10b.1 ENSEMBL cdna:known chromosome:CEL140:V:6517871:6519120:-1 gene:F46E10.10 11/11 None
F46E10.10a ENSEMBL cdna:known chromosome:CEL140:V:6518014:6519119:-1 gene:F46E10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F46E10.10b.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6518013-6519119(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46E10.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14720 Hypothetical protein F46E10.10a [Caenorhabditis elegans] ref|NP_504656.1| F46E10.10a [Caenorhabditis elegans] 0.0
blast CAE71899 Hypothetical protein CBG18957 [Caenorhabditis briggsae] 1.0E-177
blast AAO12427 Hypothetical protein F46E10.10b [Caenorhabditis elegans] ref|NP_872153.1| F46E10.10b [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR001236 EMBL-EBI Lactate/malate dehydrogenase 3.7E-35
Pfam IPR001236 EMBL-EBI Lactate/malate dehydrogenase 1.4E-49
Pfam IPR001236 EMBL-EBI Lactate/malate dehydrogenase 6.2E-22
Pfam IPR001236 EMBL-EBI Lactate/malate dehydrogenase 3.7E-35
Sequence
Target Sequence 
>C. ELEGANS:190757_S_AT
gcattcattgctgccaagtacgccgccggaaagatcccagccaagaacttctctgccatg
accagattggaccataaccgtgctcttgctcaactcgcccttaaaaccggaacaaccatc
ggaaatgtcaagaacgttatcatctggggaaatcactctggaactcaattcccagatgtc
acccacgctaccgttaacaagaacggaactgagaccgacgcttacgccgctgtcggagac
aacgctttccttcaaggaccattcatcgccactgtccaaaagcgtggaggagtcatcatt
gagaagagaaagctctcgtctgcaatgtctgccgctaaggccgcttgtgatcacatccac
gactggcatttcggaaccaaggctgggcaattcgtctccatggctgtcccatccgatggt
tcatacggaatcccacaaggactcattttctcattcccagttaccatcgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCATTGCTGCCAAGTACGCCG 83 309 421 Antisense
CAGCCAAGAACTTCTCTGCCATGAC 259 203 458 Antisense
CAGATTGGACCATAACCGTGCTCTT 460 205 483 Antisense
CGGAACTGAGACCGACGCTTACGCC 113 243 624 Antisense
TGTCGGAGACAACGCTTTCCTTCAA 539 557 651 Antisense
TTCCTTCAAGGACCATTCATCGCCA 685 697 667 Antisense
AGAGAAAGCTCTCGTCTGCAATGTC 515 69 725 Antisense
GATCACATCCACGACTGGCATTTCG 659 421 769 Antisense
GGCTGTCCCATCCGATGGTTCATAC 54 539 822 Antisense
ATCCCACAAGGACTCATTTTCTCAT 685 37 850 Antisense
TTCTCATTCCCAGTTACCATCGAGG 322 689 868 Antisense
Sequence Source Affymetrix Proprietary Database