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[190755_at]

Description F39C12.3 /REP_DB=WormBase Gene ID /WP=CE10096 /GEN=tsp-14 /TR=O44582 /GB=AAB94196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster 6grp_total > 82      4grp_total > 58      6grp_cgc > 98      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 185.3
(-1.3)
A 		429.6
(3)
A 		425
(2.9)
A 		85.8
(-3)
A 		344
B 185.2
(-0.8)
A 		418.8
(3)
A 		380.7
(2.4)
A 		49.2
(-3)
A 		370
C 139.5
(-1.6)
A 		424.4
(2.6)
A 		448.2
(3)
M 		45.6
(-3)
A 		403
avr 170
(-1.2) 		424.3
(3) 		418
(2.9) 		60.2
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 169.2
(-2.2)
A 		325.1
(3)
A 		214.6
(-0.7)
A 		261
(0.9)
A 		310
(2.5)
P 		143.8
(-3)
A 		181
B 222.2
(-0.9)
A 		290.3
(1.3)
A 		248
(-0.1)
A 		330.1
(2.6)
M 		342
(3)
P 		159.7
(-3)
A 		182
C 179.4
(-2.1)
A 		312.8
(2)
M 		206.9
(-1.3)
A 		183
(-2)
A 		345
(3)
P 		150.9
(-3)
A 		194
avr 190.3
(-1.7) 		309.4
(2.2) 		223.2
(-0.6) 		258
(0.5) 		332.3
(3) 		151.5
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 67.5
(0.3)
A 		93.3
(1.9)
A 		111.1
(3)
A 		12.6
(-3)
A 		99
B 59
(0.1)
A 		103.4
(3)
A 		88.2
(2)
A 		10.5
(-3)
A 		93
C 46.2
(-1.4)
A 		122
(1.6)
A 		156.2
(3)
M 		7.7
(-3)
A 		149
avr 57.6
(-0.4) 		106.2
(2.3) 		118.5
(3) 		10.3
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 31.2
(-3)
A 		115.6
(3)
A 		46.7
(-1.9)
A 		66.2
(-0.5)
A 		93.5
(1.4)
P 		35
(-2.7)
A 		84
B 77.3
(-1.7)
A 		96.6
(-0.2)
A 		60.2
(-3)
A 		87.4
(-0.9)
M 		139
(3)
P 		59.6
(-3)
A 		79
C 66.5
(-0.6)
A 		95.4
(1.7)
M 		52.7
(-1.7)
A 		36.8
(-3)
A 		111.6
(3)
P 		50.5
(-1.9)
A 		75
avr 58.3
(-2.1) 		102.5
(1.9) 		53.2
(-2.6) 		63.5
(-1.6) 		114.7
(3) 		48.4
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17088
Sequence Type Exemplar sequence
Representative Public ID F39C12.3 NCBI
Target Description F39C12.3 /REP_DB=WormBase Gene ID /WP=CE10096 /GEN=tsp-14 /TR=O44582 /GB=AAB94196.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transpanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076427(11), NM_076428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076427 NCBI Caenorhabditis elegans TetraSPanin family member (tsp-14) (tsp-14) mRNA, complete cds. 11/11 None
NM_076428 NCBI Caenorhabditis elegans TetraSPanin family member (tsp-14) (tsp-14) mRNA, complete cds. 11/11 None
SNAP00000037644 ENSEMBL cdna:SNAP chromosome:CEL140:X:4867080:4869403:-1 11/11 None
GENEFINDER00000037678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4867080:4871027:-1 11/11 None
F39C12.3b ENSEMBL cdna:known chromosome:CEL140:X:4866659:4874625:-1 gene:F39C12.3 11/11 A 
F39C12.3a.1 ENSEMBL cdna:known chromosome:CEL140:X:4867080:4871027:-1 gene:F39C12.3 11/11 None
F39C12.3a.2 ENSEMBL cdna:known chromosome:CEL140:X:4867080:4871028:-1 gene:F39C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4867080-4870991(-) 100.0 100.0
Public Domain and Genome References
Ensembl F39C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02514 Tetraspanin family protein 14, isoform b [Caenorhabditis elegans] ref|NP_508828.1| TetraSPanin family member (tsp-14) [Caenorhabditis elegans] 0.0
blast AAB94196 Tetraspanin family protein 14, isoform a [Caenorhabditis elegans] ref|NP_508829.1| TetraSPanin family member (tsp-14) [Caenorhabditis elegans] 0.0
blast CAE68659 Hypothetical protein CBG14558 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.3E-65
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.3E-65
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 8.4E-42
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 6.3E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508828.1 4 56-78,93-115,128-150,289-311
NP_508829.1 4 32-54,69-91,104-126,265-287
F39C12.3b 4 56-78,93-115,128-150,289-311
F39C12.3a.1 4 32-54,69-91,104-126,265-287
F39C12.3a.2 4 32-54,69-91,104-126,265-287
SNAP00000037644 2 13-35,174-196
GENEFINDER00000037678 4 45-67,82-104,117-139,278-300
Sequence
Target Sequence 
>C. ELEGANS:190755_AT
tgctctaacaaaacgacccggcgacctggaacacgatatttacacccgcggatgccttca
gccgcttcggacacttttcgagtcccacgcagtgcatgttggagcattcgttgctcttct
cattgttccagtgtgtatctcggtgtgtctcaccaacatccttgcaaaacaagtcgacca
tcagaggtacctgttggagcgggaagcacggcgaaacgatcgacggcgaaagcgagatca
taaccgtagagatcaactgaactcgttggatctacttgaagaaggaaaattcaacaacgc
ttctgctaatgccacaaggccgagaccaccggatattccgcctccgctaccaccaattga
gcatgtgccgaggaaaaagtcacgaaacgcgagtagctctccaactcgaaagcccaaatc
tgctggggttgaaaacgcggcagctcgtcgaaaaaggactgcgacaacgactcgaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTAACAAAACGACCCGGCGAC 63 559 708 Antisense
TGGAACACGATATTTACACCCGCGG 418 547 734 Antisense
AGTCCCACGCAGTGCATGTTGGAGC 494 59 788 Antisense
GAGCATTCGTTGCTCTTCTCATTGT 458 389 809 Antisense
ATTGTTCCAGTGTGTATCTCGGTGT 526 3 829 Antisense
ATCTCGGTGTGTCTCACCAACATCC 432 33 844 Antisense
TCAACAACGCTTCTGCTAATGCCAC 65 631 998 Antisense
CTCCGCTACCACCAATTGAGCATGT 224 235 1049 Antisense
GTCACGAAACGCGAGTAGCTCTCCA 243 465 1086 Antisense
GTTGAAAACGCGGCAGCTCGTCGAA 455 437 1135 Antisense
AGGACTGCGACAACGACTCGAACAC 562 55 1162 Antisense
Sequence Source Affymetrix Proprietary Database