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[190754_at] 7TM chemoreceptor, srh family

Description DC2.6 /REP_DB=WormBase Gene ID /WP=CE20635 /GEN=srh-77 /TR=Q9UAW5 /GB=AAD14727.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 0      4grp_total > 28      6grp_total_sub > Hat      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 43.4
(-0.2)
A 		51.6
(0.9)
A 		23.3
(-3)
A 		66.8
(3)
A 		44
B 39.6
(-0.8)
A 		84.5
(3)
A 		13.8
(-3)
A 		21.5
(-2.3)
A 		71
C 61.9
(0.4)
A 		10.3
(-3)
A 		28.4
(-1.8)
A 		100.9
(3)
A 		91
avr 48.3
(0.8) 		48.8
(0.9) 		21.8
(-3) 		63.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 6.5
(-3)
A 		55.3
(3)
A 		31
(0)
A 		9.1
(-2.7)
A 		21.2
(-1.2)
A 		42.1
(1.4)
A 		49
B 9.1
(-3)
A 		14.7
(-2.1)
A 		37.8
(1.6)
A 		24.7
(-0.5)
A 		40.3
(2)
A 		46.6
(3)
A 		38
C 45.3
(0.6)
A 		71.2
(3)
A 		37.7
(-0.1)
A 		6.7
(-3)
A 		31.4
(-0.7)
A 		23.3
(-1.5)
A 		65
avr 20.3
(-1.8) 		47.1
(3) 		35.5
(0.9) 		13.5
(-3) 		31
(0.1) 		37.3
(1.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.8
(3)
A 		11.2
(0.2)
A 		6.1
(-3)
A 		9.8
(-0.7)
A 		10
B 12.6
(0.2)
A 		20.9
(3)
A 		3.2
(-3)
A 		4.6
(-2.5)
A 		18
C 20.5
(3)
A 		3
(-3)
A 		9.9
(-0.6)
A 		17
(1.8)
A 		18
avr 16.3
(3) 		11.7
(0.2) 		6.4
(-3) 		10.5
(-0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-3)
A 		19.7
(3)
A 		6.7
(-1.2)
A 		2.3
(-2.6)
A 		6.4
(-1.3)
A 		10.3
(-0)
A 		19
B 3.2
(-3)
A 		4.9
(-2.3)
A 		9.2
(-0.5)
A 		6.5
(-1.6)
A 		16.4
(2.6)
A 		17.4
(3)
A 		14
C 16.8
(1.6)
A 		21.7
(3)
A 		9.6
(-0.6)
A 		1.3
(-3)
A 		10.1
(-0.4)
A 		7.8
(-1.1)
A 		20
avr 7.1
(-1.2) 		15.4
(3) 		8.5
(-0.5) 		3.4
(-3) 		11
(0.8) 		11.8
(1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15729
Sequence Type Exemplar sequence
Representative Public ID DC2.6 NCBI
Target Description DC2.6 /REP_DB=WormBase Gene ID /WP=CE20635 /GEN=srh-77 /TR=Q9UAW5 /GB=AAD14727.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070757
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070757 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-77) (srh-77) mRNA, complete cds. None
DC2.6 ENSEMBL cdna:known chromosome:CEL140:V:222857:226776:-1 gene:DC2.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:222823-226776(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-77
Ensembl DC2.6
Entrez Gene 191871 Entrez gene
SwissProt Q9UAW5 EMBL-EBI
WormBase CE35846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503158 Serpentine Receptor, class H family member (srh-77) [Caenorhabditis elegans] gb|AAD14727.2| Serpentine receptor, class h protein 77 [Caenorhabditis elegans] 3.0E-90
blast CAE73657 Hypothetical protein CBG21163 [Caenorhabditis briggsae] 3.0E-50
blast AAC26911 Serpentine receptor, class h protein 79 [Caenorhabditis elegans] ref|NP_504930.1| Serpentine Receptor, class H family member (srh-79) [Caenorhabditis elegans] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.1E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503158.2 3 30-52,65-87,107-129
DC2.6 3 30-52,65-87,107-129
Sequence
Target Sequence 
>C. ELEGANS:190754_AT
ttttcctcgttatcatgttatccataatttttctatattctcccgcagaccaagaagccg
caagatttgaacttttgaaaacgattccctgcccaactgaggagtttttcaaagacagct
cccacgtattggtatttatgaatgaagaagcgcatataaagcgcgcaggactattgatta
tattttgtatttcatctgaaatcactcagattgcatttttcatctcatgctgctcttatt
atctatacttcgcttccgctggattcgcgtcaaaaaaaacgcgacagatgcaggtctcat
tttttcgaaaaattattttcaaaatgttcgttcactcgattctcttgttgccaattgtga
tattttcagtgttctcgcgggtttttaattattataatcaagcaataacaaatatcctct
tcctattcacatcaatgcacggatttttctcggctcttgtagtgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTCGTTATCATGTTATCCAT 386 677 482 Antisense
TCCCGCAGACCAAGAAGCCGCAAGA 430 597 522 Antisense
AAGACAGCTCCCACGTATTGGTATT 449 153 593 Antisense
GCATTTTTCATCTCATGCTGCTCTT 223 309 694 Antisense
GCTGCTCTTATTATCTATACTTCGC 267 297 710 Antisense
GCTTCCGCTGGATTCGCGTCAAAAA 639 305 733 Antisense
GACAGATGCAGGTCTCATTTTTTCG 255 369 764 Antisense
AAAATGTTCGTTCACTCGATTCTCT 171 133 802 Antisense
GTGATATTTTCAGTGTTCTCGCGGG 698 483 838 Antisense
CTCTTCCTATTCACATCAATGCACG 110 231 898 Antisense
ATTTTTCTCGGCTCTTGTAGTGATA 475 15 924 Antisense
Sequence Source Affymetrix Proprietary Database