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[190753_at] glucose tranporter like

Description F13B12.2 /REP_DB=WormBase Gene ID /WP=CE05600 /TR=Q19376 /GB=CAA94591.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glucose tranporter like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 90      6grp_total > 95      4grp_total > 25      6grp_highest_sub > In      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 134.3
(-3)
P 		227.9
(-0.1)
P 		237.9
(0.2)
P 		330.4
(3)
P 		196
B 127.2
(-3)
P 		239.3
(1.7)
P 		189.4
(-0.4)
P 		271
(3)
P 		144
C 115.5
(-3)
P 		255.4
(-0.3)
P 		189.3
(-1.6)
P 		423.2
(3)
P 		308
avr 125.7
(-3) 		240.9
(0.2) 		205.5
(-0.8) 		341.5
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 180.2
(1.2)
P 		97.9
(-3)
P 		127
(-1.5)
P 		194.9
(2)
P 		215.3
(3)
P 		207.1
(2.6)
P 		117
B 124.7
(-1.5)
P 		101.4
(-3)
P 		171.4
(1.5)
P 		194.4
(3)
P 		192.7
(2.9)
P 		194.4
(3)
P 		93
C 82.5
(-3)
P 		97
(-2.2)
P 		120.2
(-1)
P 		182.4
(2.2)
P 		198.3
(3)
P 		194.5
(2.8)
P 		116
avr 129.1
(-1.2) 		98.8
(-3) 		139.5
(-0.6) 		190.6
(2.3) 		202.1
(3) 		198.7
(2.8) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 48.9
(-2.8)
P 		49.5
(-2.5)
P 		62.2
(3)
P 		48.4
(-3)
P 		14
B 40.6
(-3)
P 		59.1
(3)
P 		43.9
(-1.9)
P 		57.7
(2.5)
P 		19
C 38.2
(-3)
P 		73.4
(3)
P 		66
(1.7)
P 		71.4
(2.7)
P 		35
avr 42.6
(-3) 		60.7
(3) 		57.4
(1.9) 		59.2
(2.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 33.2
(-2.1)
P 		34.8
(-1.9)
P 		27.7
(-3)
P 		49.4
(0.5)
P 		65
(3)
P 		50.4
(0.7)
P 		37
B 43.4
(-1.7)
P 		33.7
(-3)
P 		41.6
(-1.9)
P 		51.5
(-0.6)
P 		78.3
(3)
P 		72.5
(2.2)
P 		45
C 30.6
(-2.8)
P 		29.6
(-3)
P 		30.6
(-2.8)
P 		36.7
(-1.8)
P 		64.2
(2.8)
P 		65.1
(3)
P 		36
avr 35.7
(-2.5) 		32.7
(-3) 		33.3
(-2.9) 		45.9
(-0.8) 		69.2
(3) 		62.7
(1.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9232
Sequence Type Exemplar sequence
Representative Public ID F13B12.2 NCBI
Target Description F13B12.2 /REP_DB=WormBase Gene ID /WP=CE05600 /TR=Q19376 /GB=CAA94591.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glucose tranporter like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069524 NCBI Caenorhabditis elegans F13B12.2 (F13B12.2) mRNA, complete cds. 11/11 None
SNAP00000009875 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10426268:10427436:-1 10/11 None
GENEFINDER00000009882 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10426268:10428772:-1 11/11 None
F13B12.2 ENSEMBL cdna:known chromosome:CEL140:IV:10426214:10429082:-1 gene:F13B12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10426273-10429842(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucose tranporter like
Ensembl F13B12.2
Entrez Gene 177935 Entrez gene
SwissProt Q19376 EMBL-EBI
WormBase CE37346 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4869 cysteine protease inhibitor activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94591 Hypothetical protein F13B12.2 [Caenorhabditis elegans] ref|NP_501925.2| F13B12.2 [Caenorhabditis elegans] 0.0
blast CAE63821 Hypothetical protein CBG08372 [Caenorhabditis briggsae] 0.0
blast CAE63821 Hypothetical protein CBG08372 [Caenorhabditis briggsae] 1.0E-135
blast CAA94591 Hypothetical protein F13B12.2 [Caenorhabditis elegans] ref|NP_501925.2| F13B12.2 [Caenorhabditis elegans] 1.0E-126
blast CAA94591 Hypothetical protein F13B12.2 [Caenorhabditis elegans] ref|NP_501925.2| F13B12.2 [Caenorhabditis elegans] 1.0E-121
blast CAE63821 Hypothetical protein CBG08372 [Caenorhabditis briggsae] 1.0E-117
blast XP_487836 PREDICTED: similar to intestinal facilitative glucose transporter 7 [Mus musculus] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.2E-52
Pfam IPR005828 EMBL-EBI General substrate transporter 3.1E-25
Pfam IPR005828 EMBL-EBI General substrate transporter 3.6E-9
Pfam IPR005828 EMBL-EBI General substrate transporter 7.1E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501925.2 12 30-52,82-104,117-136,141-163,176-198,204-226,289-311,326-348,355-377,392-411,424-446,451-473
F13B12.2 12 30-52,82-104,117-136,141-163,176-198,204-226,289-311,326-348,355-377,392-411,424-446,451-473
SNAP00000009875 5 71-93,108-130,137-159,169-191,204-226
GENEFINDER00000009882 7 64-86,117-139,261-283,298-320,341-363,378-400,407-429
Sequence
Target Sequence 
>C. ELEGANS:190753_AT
tcattgatattcttgtcccattcctacctgcccttggttccattctatcaattcttctaa
ctatcccagctctccgatgggttgagacaagaggaagacgaccattgctactcaaaacac
taatgttttgtataattgcaaatgtctttcttctaatattcactttaatatcaagtgata
gttctggatgggcatcttggggattcgcagctgcatttttcatgtatggtattggataca
atttgggtgttggaccagttgcatatttcctcccagctgaattagttccacctgaagcag
cgagtgcaagtttaggtgcggcggttgctgtgaattggatttgtacaattaccacgacac
tgttttattatccattgagtaagactgttggaggatggagttacttgatatttattattc
caacgtctattttctcaatgattttatggaggttacttccagaaactaaatttcattata
agattgatccattggaaatacgacttctgacagatctcggaccatcaattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTGATATTCTTGTCCCATTCCT 485 619 731 Antisense
TGCCCTTGGTTCCATTCTATCAATT 352 585 759 Antisense
ATCAATTCTTCTAACTATCCCAGCT 647 25 777 Antisense
TATCCCAGCTCTCCGATGGGTTGAG 120 657 792 Antisense
AGGAAGACGACCATTGCTACTCAAA 706 53 822 Antisense
GCATCTTGGGGATTCGCAGCTGCAT 115 309 922 Antisense
ATTTCCTCCCAGCTGAATTAGTTCC 473 17 995 Antisense
GTTCCACCTGAAGCAGCGAGTGCAA 88 441 1015 Antisense
TTAGGTGCGGCGGTTGCTGTGAATT 205 679 1042 Antisense
ATTATTCCAACGTCTATTTTCTCAA 556 13 1144 Antisense
GACAGATCTCGGACCATCAATTGCT 228 369 1239 Antisense
Sequence Source Affymetrix Proprietary Database