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[190752_at] histone binding protein

Description C09H10.6 /REP_DB=WormBase Gene ID /WP=CE03007 /TR=Q17886 /GB=CAA90441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=histone binding protein
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 98      6grp_total > 87      4grp_total > 62      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 779.5
(3)
P 		608.4
(-1.5)
P 		657.7
(-0.2)
P 		549.5
(-3)
P 		230
B 822.4
(3)
P 		731.6
(1.4)
P 		771.6
(2.1)
P 		476.3
(-3)
P 		346
C 850.2
(3)
P 		614.3
(-0.7)
P 		744.6
(1.4)
P 		464.3
(-3)
P 		386
avr 817.4
(3) 		651.4
(-0.1) 		724.6
(1.3) 		496.7
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1475
1 2 3 4 5 6 range
A 661.1
(-3)
P 		762.6
(-2.6)
P 		782.5
(-2.5)
P 		993.5
(-1.6)
P 		1240.7
(-0.5)
P 		2064.9
(3)
P 		1404
B 642.5
(-3)
P 		684.1
(-2.8)
P 		803.6
(-2.3)
P 		869.7
(-2)
P 		1379
(0.3)
P 		1974
(3)
P 		1332
C 765.5
(-2.7)
P 		700.8
(-3)
P 		897.2
(-2.2)
P 		944.9
(-2)
P 		1269.5
(-0.6)
P 		2117.8
(3)
P 		1417
avr 689.7
(-3) 		715.8
(-2.9) 		827.8
(-2.4) 		936
(-1.9) 		1296.4
(-0.3) 		2052.2
(3) 		1363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 283.8
(3)
P 		132.1
(-1.5)
P 		171.9
(-0.3)
P 		80.4
(-3)
P 		203
B 262.3
(3)
P 		180.7
(-0)
P 		178.8
(-0.1)
P 		101.5
(-3)
P 		161
C 281.4
(3)
P 		176.6
(-0.1)
P 		259.5
(2.4)
P 		78.3
(-3)
P 		203
avr 275.8
(3) 		163.1
(-0.6) 		203.4
(0.7) 		86.7
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 121.9
(-3)
P 		271.2
(-0.6)
P 		170.4
(-2.2)
P 		252
(-1)
P 		374.4
(1)
P 		502.7
(3)
P 		381
B 223.6
(-2.7)
P 		227.7
(-2.6)
P 		195.1
(-3)
P 		230.4
(-2.6)
P 		560.3
(1.1)
P 		736.1
(3)
P 		541
C 283.7
(-1.9)
P 		213.8
(-2.7)
P 		228.3
(-2.6)
P 		190
(-3)
P 		410.8
(-0.4)
P 		708.9
(3)
P 		519
avr 209.7
(-2.8) 		237.6
(-2.5) 		197.9
(-3) 		224.1
(-2.7) 		448.5
(0.3) 		649.2
(3) 		451
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3814
Sequence Type Exemplar sequence
Representative Public ID C09H10.6 NCBI
Target Description C09H10.6 /REP_DB=WormBase Gene ID /WP=CE03007 /TR=Q17886 /GB=CAA90441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=histone binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063979 NCBI Caenorhabditis elegans C09H10.6 (C09H10.6) mRNA, complete cds. 11/11 None
SNAP00000010333 ENSEMBL cdna:SNAP chromosome:CEL140:II:11106549:11107855:1 11/11 None
GENEFINDER00000010340 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11104431:11107855:1 11/11 None
C09H10.6 ENSEMBL cdna:known chromosome:CEL140:II:11106535:11107983:1 gene:C09H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11106545-11107852(+) 100.0 100.0
Public Domain and Genome References
Gene Title histone binding protein
Ensembl C09H10.6
Entrez Gene 174697 Entrez gene
SwissProt Q17886 EMBL-EBI
WormBase CE03007 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246220_AT tetratricopeptide repeat (TPR)-containing protein at
DROSOPHILA_2:1624887_AT dm
DROSGENOME1:155060_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA90440 Hypothetical protein C09H10.9 [Caenorhabditis elegans] ref|NP_496379.1| C09H10.9 [Caenorhabditis elegans] 0.0
blast CAA90441 Hypothetical protein C09H10.6 [Caenorhabditis elegans] ref|NP_496380.1| C09H10.6 [Caenorhabditis elegans] 1.0E-158
blast CAA90441 Hypothetical protein C09H10.6 [Caenorhabditis elegans] ref|NP_496380.1| C09H10.6 [Caenorhabditis elegans] 1.0E-157
blast CAE59569 Hypothetical protein CBG02966 [Caenorhabditis briggsae] 1.0E-75
blast CAE59569 Hypothetical protein CBG02966 [Caenorhabditis briggsae] 3.0E-75
blast CAB02850 Hypothetical protein C50B6.2 [Caenorhabditis elegans] ref|NP_506298.1| C50B6.2 [Caenorhabditis elegans] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:190752_AT
ggaatggaacctgaaactcgctgatgtactggttctcctcggcgagcacggaatatcaga
tggaaagtatactcaggcttttgaggacttggatcgtgccctcaacattcagcgcaatgt
tcttccaccgtcgtcgagaaaaatcgcccaaacctacattctcatcggaaacgcgtgtgc
tagcgatgcgaattacgatgaaaccgttcagtacttcggcaaaaccaaggacgtactcat
cgccaggcagactgagttgaagcatgagctggaaagaggtgttgatgataaggaaaagaa
gtctgaatttgagaatgagctgaaggagcttgaagagatgatgccaggcgttgaagaaat
gattgctgatgctgtgcactctgcagcacaagttgaggaaactaagaaggccattaaagc
gcaattcgaaggattcacacaagtattggcaaaacttccacaagaagccggtgatcagaa
ggaagcaaatgatatttctagcttggttcgtcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATGGAACCTGAAACTCGCTGAT 657 531 564 Antisense
AAACTCGCTGATGTACTGGTTCTCC 31 129 577 Antisense
GTTCTCCTCGGCGAGCACGGAATAT 461 443 595 Antisense
TGAGGACTTGGATCGTGCCCTCAAC 507 567 645 Antisense
GAGAAAAATCGCCCAAACCTACATT 266 393 699 Antisense
ACCTACATTCTCATCGGAAACGCGT 330 87 715 Antisense
GGAAACGCGTGTGCTAGCGATGCGA 460 527 730 Antisense
GATGAAACCGTTCAGTACTTCGGCA 543 387 760 Antisense
AAACCAAGGACGTACTCATCGCCAG 19 125 785 Antisense
TTGCTGATGCTGTGCACTCTGCAGC 477 699 926 Antisense
GATATTTCTAGCTTGGTTCGTCGTC 579 425 1054 Antisense
Sequence Source Affymetrix Proprietary Database