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[190751_at] serine/threonine kinase

Description C44C10.7 /REP_DB=WormBase Gene ID /WP=CE05414 /TR=Q18615 /GB=CAA93637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 14.7
(3)
A 		7
(-3)
A 		10.7
(-0.1)
A 		7.5
(-2.6)
A 		8
B 7.7
(-3)
A 		12.6
(3)
A 		7.8
(-2.9)
A 		7.9
(-2.8)
A 		5
C 7.3
(-2.8)
A 		5
(-3)
A 		5.1
(-3)
A 		61.2
(3)
A 		56
avr 9.9
(-2.3) 		8.2
(-2.9) 		7.9
(-3) 		25.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 12.2
(0)
A 		14.5
(0.8)
A 		10.6
(-0.5)
A 		2.5
(-3)
A 		5.3
(-2.1)
A 		21.6
(3)
A 		19
B 12.2
(-1.5)
A 		34.2
(3)
A 		10.3
(-1.9)
A 		12
(-1.5)
A 		6.1
(-2.7)
A 		4.8
(-3)
A 		29
C 4.7
(-2.5)
A 		24
(3)
A 		12.5
(-0.3)
A 		8.8
(-1.3)
A 		2.8
(-3)
A 		2.8
(-3)
A 		21
avr 9.7
(-1.5) 		24.2
(3) 		11.1
(-1) 		7.8
(-2) 		4.7
(-3) 		9.7
(-1.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.3
(3)
A 		1.5
(-2.4)
A 		2.8
(-0.6)
A 		1.1
(-3)
A 		4
B 2.4
(-0)
A 		3.1
(3)
A 		1.8
(-2.6)
A 		1.7
(-3)
A 		1
C 2.4
(-2.3)
A 		1.4
(-3)
A 		1.8
(-2.7)
A 		10.3
(3)
A 		9
avr 3.4
(0.5) 		2
(-3) 		2.1
(-2.8) 		4.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.3
(-0.8)
A 		5.2
(2.9)
A 		2.3
(-0.8)
A 		0.6
(-3)
A 		1.6
(-1.7)
A 		5.3
(3)
A 		5
B 4.2
(-1.5)
A 		11.4
(3)
A 		2.5
(-2.6)
A 		3.2
(-2.1)
A 		2.5
(-2.6)
A 		1.8
(-3)
A 		10
C 1.7
(-2.3)
A 		7.3
(3)
A 		3.2
(-0.8)
A 		1.8
(-2.2)
A 		0.9
(-3)
A 		1
(-2.9)
A 		6
avr 2.7
(-2) 		8
(3) 		2.7
(-2) 		1.9
(-2.8) 		1.7
(-3) 		2.7
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16238
Sequence Type Exemplar sequence
Representative Public ID C44C10.7 NCBI
Target Description C44C10.7 /REP_DB=WormBase Gene ID /WP=CE05414 /TR=Q18615 /GB=CAA93637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077552 NCBI Caenorhabditis elegans C44C10.7 (C44C10.7) mRNA, complete cds. 11/11 None
SNAP00000037964 ENSEMBL cdna:SNAP chromosome:CEL140:X:11686922:11688191:-1 11/11 None
GENEFINDER00000037978 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11686922:11688191:-1 11/11 None
C44C10.7 ENSEMBL cdna:known chromosome:CEL140:X:11686922:11688191:-1 gene:C44C10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11686921-11688191(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl C44C10.7
Entrez Gene 183456 Entrez gene
SwissProt Q18615 EMBL-EBI
WormBase CE05414 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93637 Hypothetical protein C44C10.7 [Caenorhabditis elegans] ref|NP_509953.1| C44C10.7 [Caenorhabditis elegans] 0.0
blast CAA94155 Hypothetical protein K08H2.5 [Caenorhabditis elegans] ref|NP_510198.1| K08H2.5 [Caenorhabditis elegans] 5.0E-72
blast CAB02966 Hypothetical protein F16B12.7 [Caenorhabditis elegans] ref|NP_510350.2| F16B12.7 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-9
Pfam IPR000719 EMBL-EBI Protein kinase 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:190751_AT
aagtctggaaggttctcggcatctaatgttttgaaaatcgttcattgtatggcacatgga
cttcgctcccttcacaaaatcgggttcattcatcgagattgccacgcaggaaacattttg
ttcgcgagtagattgactccgactgctccagtgaaaattgtcgactttgggattggacgg
cgttttgccaatcgtcgtggtcatcccattccaagtccttctcgtgatattgattttctt
ggctgcgagcattgttcggttaatgtgcacgtcggaggaattcctggaccaaaggatgat
tttctgagcatggttctattggcaattcgaatgagtggaattcacgcgatctcgtatgaa
aactcggaaactaacttgtgccagaaaaaaagctttgagagtaatccggctcaattcctc
atgcgttgcccatggctcgtgccagtctctgttgcaattatcaagaacgatccaaaccgt
ttcaattatgattgtgtcattcatgccattgagaatgcatcccttttcaatccttctgag
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTGGAAGGTTCTCGGCATCTA 567 157 454 Antisense
TTGTATGGCACATGGACTTCGCTCC 296 703 498 Antisense
CTTCGCTCCCTTCACAAAATCGGGT 512 213 514 Antisense
GGTTCATTCATCGAGATTGCCACGC 301 507 536 Antisense
TTGACTCCGACTGCTCCAGTGAAAA 215 701 586 Antisense
GTTTTGCCAATCGTCGTGGTCATCC 115 449 635 Antisense
CATTCCAAGTCCTTCTCGTGATATT 459 217 660 Antisense
TATTGATTTTCTTGGCTGCGAGCAT 527 665 681 Antisense
GAGTGGAATTCACGCGATCTCGTAT 605 401 786 Antisense
CGTGCCAGTCTCTGTTGCAATTATC 183 245 891 Antisense
CATCCCTTTTCAATCCTTCTGAGGT 509 211 971 Antisense
Sequence Source Affymetrix Proprietary Database