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[190750_at]

Description F02E9.6 /REP_DB=WormBase Gene ID /WP=CE27120 /TR=O01318 /GB=CAB04051.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_high_8_8 > 49      6grp_highest_nonorm > 74      6grp_total > 48      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 605
(3)
P 		388.8
(-0.7)
P 		435.8
(0.1)
P 		255.3
(-3)
P 		350
B 627.8
(3)
P 		449.2
(0.2)
P 		470.2
(0.5)
P 		246.5
(-3)
P 		381
C 594.7
(3)
P 		462.4
(0.3)
P 		466.3
(0.4)
P 		296.2
(-3)
M 		299
avr 609.2
(3) 		433.5
(-0.1) 		457.4
(0.3) 		266
(-3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 828
(3)
P 		695.3
(0.2)
P 		539.6
(-3)
P 		701.4
(0.4)
P 		752.8
(1.4)
P 		759.7
(1.6)
P 		288
B 801.9
(3)
P 		708
(-2.8)
P 		725.3
(-1.7)
P 		789.9
(2.3)
P 		726.3
(-1.7)
P 		704.8
(-3)
P 		97
C 666.6
(-1)
P 		710.6
(0.3)
P 		702.4
(0.1)
P 		793.5
(2.8)
P 		596.8
(-3)
P 		801.7
(3)
P 		205
avr 765.5
(3) 		704.6
(-0.3) 		655.8
(-3) 		761.6
(2.8) 		692
(-1) 		755.4
(2.4) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 220.3
(3)
P 		84.4
(-1.5)
P 		113.9
(-0.5)
P 		37.4
(-3)
P 		183
B 200.2
(3)
P 		110.9
(-0.6)
P 		109
(-0.7)
P 		52.5
(-3)
P 		148
C 196.9
(3)
P 		132.9
(0.4)
P 		162.5
(1.6)
P 		49.9
(-3)
M 		147
avr 205.8
(3) 		109.4
(-0.6) 		128.5
(0.1) 		46.6
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 152.6
(-1.4)
P 		247.3
(3)
P 		117.5
(-3)
P 		177.9
(-0.2)
P 		227.2
(2.1)
P 		185
(0.1)
P 		130
B 279
(2.2)
P 		235.7
(0)
P 		176.1
(-3)
P 		209.2
(-1.3)
P 		295.1
(3)
P 		262.8
(1.4)
P 		119
C 247.1
(1.8)
P 		216.8
(0.2)
P 		178.8
(-1.9)
P 		159.6
(-3)
P 		193.1
(-1.2)
P 		268.4
(3)
P 		109
avr 226.2
(2.1) 		233.3
(2.6) 		157.5
(-3) 		182.2
(-1.2) 		238.5
(3) 		238.7
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.568
Sequence Type Exemplar sequence
Representative Public ID F02E9.6 NCBI
Target Description F02E9.6 /REP_DB=WormBase Gene ID /WP=CE27120 /TR=O01318 /GB=CAB04051.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025913(11), NM_001025912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025913 NCBI Caenorhabditis elegans F02E9.10b (F02E9.10) mRNA, complete cds. 11/11 None
NM_001025912 NCBI Caenorhabditis elegans F02E9.10a (F02E9.10) mRNA, complete cds. 11/11 None
SNAP00000012710 ENSEMBL cdna:SNAP chromosome:CEL140:I:8435330:8437938:-1 11/11 None
GENEFINDER00000012718 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8435330:8437938:-1 11/11 None
F02E9.10.1 ENSEMBL cdna:known chromosome:CEL140:I:8435240:8437957:-1 gene:F02E9.10 11/11 None
F02E9.10.2 ENSEMBL cdna:known chromosome:CEL140:I:8435330:8437946:-1 gene:F02E9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8435260-8440467(-) 100.0 100.0
Public Domain and Genome References
Ensembl F02E9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79161 Hypothetical protein F02E9.10b [Caenorhabditis elegans] ref|NP_001021084.1| F02E9.10b [Caenorhabditis elegans] 0.0
blast CAC42275 Hypothetical protein F02E9.10a [Caenorhabditis elegans] ref|NP_001021083.1| F02E9.10a [Caenorhabditis elegans] 0.0
blast T20512 hypothetical protein F02E9.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.9E-7
Sequence
Target Sequence 
>C. ELEGANS:190750_AT
tattctgcacatgacgctccagtcaccggtctcacgattgacgagaaatctggaggaacg
agattcgcgagttcatcagcttcatctcaaatattcatctggcatattgagatgacgact
ccgattatgtcaatcacgaatgaacatacttcaacaatttcagcactttcattctcacca
actagtcggcatttgttgtctggtggagatgatgctatgattcttatctaccgtattcca
ggagttggagaaaatactccagtgcatgttgcatactatcctccagttgaacaaccctcc
gatataactgaacccgaatcatcttcccaacttgccgaagtaccatcagcatcaccgtac
gat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTGCACATGACGCTCCAGTCA 148 665 2230 Antisense
GTCACCGGTCTCACGATTGACGAGA 560 463 2251 Antisense
ACAATTTCAGCACTTTCATTCTCAC 206 115 2383 Antisense
TCATTCTCACCAACTAGTCGGCATT 456 619 2398 Antisense
AGTCGGCATTTGTTGTCTGGTGGAG 583 59 2413 Antisense
GATTCTTATCTACCGTATTCCAGGA 691 429 2448 Antisense
TGCATGTTGCATACTATCCTCCAGT 242 579 2492 Antisense
GAACAACCCTCCGATATAACTGAAC 185 353 2518 Antisense
ATAACTGAACCCGAATCATCTTCCC 112 23 2533 Antisense
CATCTTCCCAACTTGCCGAAGTACC 439 213 2549 Antisense
AGTACCATCAGCATCACCGTACGAT 638 61 2568 Antisense
Sequence Source Affymetrix Proprietary Database