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[190749_at] tyrosine protein kinase

Description F09G2.1 /REP_DB=WormBase Gene ID /WP=CE09296 /TR=O17408 /GB=AAB71320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine protein kinase
Cluster 6grp_high1_10_10 > 63      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_total > 63      4grp_total > 01      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 168.6
(-2.9)
P 		164.5
(-3)
P 		170.8
(-2.8)
P 		405.8
(3)
P 		241
B 153.3
(-3)
P 		161.3
(-2.6)
P 		188.9
(-1.2)
P 		270.8
(3)
P 		118
C 186.4
(-1.4)
P 		174.1
(-3)
P 		221.4
(3)
P 		212
(1.8)
P 		47
avr 169.4
(-2.9) 		166.6
(-3) 		193.7
(-1.7) 		296.2
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 129.5
(-3)
A 		166.8
(1.6)
P 		156.8
(0.3)
M 		178.4
(3)
P 		154.2
(0)
P 		171.9
(2.2)
P 		49
B 130.6
(-3)
P 		179.8
(-1.1)
P 		287.8
(3)
P 		187.2
(-0.8)
P 		138.2
(-2.7)
P 		144.7
(-2.5)
P 		157
C 133.6
(-3)
P 		163.6
(-0.8)
P 		209.3
(2.5)
P 		215.8
(3)
P 		185.9
(0.8)
P 		193.4
(1.4)
P 		82
avr 131.2
(-3) 		170.1
(-0.3) 		218
(3) 		193.8
(1.3) 		159.4
(-1.1) 		170
(-0.3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 61.4
(3)
P 		35.7
(-3)
P 		44.7
(-0.9)
P 		59.4
(2.5)
P 		26
B 48.9
(0.1)
P 		39.8
(-3)
P 		43.8
(-1.7)
P 		57.7
(3)
P 		18
C 61.7
(0.8)
P 		50.1
(-0.9)
P 		77.2
(3)
P 		35.7
(-3)
P 		42
avr 57.3
(3) 		41.9
(-3) 		55.2
(2.2) 		50.9
(0.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 23.9
(-3)
A 		59.3
(3)
P 		34.1
(-1.3)
M 		45.2
(0.6)
P 		46.5
(0.8)
P 		41.8
(0)
P 		35
B 45.4
(-3)
P 		59.8
(0.5)
P 		69.9
(3)
P 		49.6
(-2)
P 		56.1
(-0.4)
P 		54
(-0.9)
P 		25
C 49.5
(-1.3)
P 		49.9
(-1.2)
P 		53.3
(-0.2)
P 		43.4
(-3)
P 		60.2
(1.7)
P 		64.7
(3)
P 		21
avr 39.6
(-3) 		56.3
(3) 		52.4
(1.6) 		46.1
(-0.7) 		54.3
(2.3) 		53.5
(2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11342
Sequence Type Exemplar sequence
Representative Public ID F09G2.1 NCBI
Target Description F09G2.1 /REP_DB=WormBase Gene ID /WP=CE09296 /TR=O17408 /GB=AAB71320.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=tyrosine protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072426 NCBI Caenorhabditis elegans F09G2.1 (F09G2.1) mRNA, complete cds. 11/11 None
SNAP00000004756 ENSEMBL cdna:SNAP chromosome:CEL140:V:7205280:7208099:1 11/11 None
GENEFINDER00000004767 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7205353:7208099:1 11/11 None
F09G2.1 ENSEMBL cdna:known chromosome:CEL140:V:7202851:7208201:1 gene:F09G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7203264-7208100(+) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine protein kinase
Ensembl F09G2.1
Entrez Gene 179108 Entrez gene
SwissProt O17408 EMBL-EBI
WormBase CE30744 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504827 F09G2.1 [Caenorhabditis elegans] gb|AAB71320.2| Hypothetical protein F09G2.1 [Caenorhabditis elegans] 0.0
blast CAE72020 Hypothetical protein CBG19102 [Caenorhabditis briggsae] 0.0
blast CAE74901 Hypothetical protein CBG22767 [Caenorhabditis briggsae] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0055
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-51
Pfam IPR000719 EMBL-EBI Protein kinase 0.0055
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-51
Pfam IPR000719 EMBL-EBI Protein kinase 0.0055
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504827.2 1 491-513
F09G2.1 1 491-513
SNAP00000004756 1 178-200
GENEFINDER00000004767 1 153-175
Sequence
Target Sequence 
>C. ELEGANS:190749_AT
gagccaactgagctgattgcgcatctgaagtccggagcccgaccaaagtttccattactc
gcaactgataaaattgaagagataatgagctcgtgctggtcagaaaagtcagaggaacga
ccagattttgatgagctctcaaaattgtttgcaactcaattggaacagacaaccgaagga
tatggatacctggaattgataagaacaaaagattatcgagtgattgcagaagcattacaa
aaaccagatgattcacctactgatggaacagatgaaccaatatgtatagatgatcatcca
ccatatgtgacacgaaatcgttcagtaacgtggaggagtaaagcaaatggagaagcaaag
ttaggaagagaatacagtatgacaactcatgtttgtgaagacgaaactcatcaattacca
aacggtgttccaaaattaccctctgccgctccagctgaaccacacgaaaaggataaaaaa
gaaaagaaaaagtcgtatttgaatctgaatattccaaatattctaccatctttgaatgca
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAACTGAGCTGATTGCGCATC 167 385 2176 Antisense
TGATTGCGCATCTGAAGTCCGGAGC 505 563 2189 Antisense
GCCCGACCAAAGTTTCCATTACTCG 221 285 2212 Antisense
GTTTCCATTACTCGCAACTGATAAA 391 449 2223 Antisense
GAGCTCGTGCTGGTCAGAAAAGTCA 435 387 2262 Antisense
GTCAGAGGAACGACCAGATTTTGAT 11 465 2283 Antisense
AGCTCTCAAAATTGTTTGCAACTCA 171 79 2309 Antisense
AAACCAGATGATTCACCTACTGATG 426 125 2416 Antisense
GATGATCATCCACCATATGTGACAC 231 411 2464 Antisense
GTGACACGAAATCGTTCAGTAACGT 172 477 2482 Antisense
AATATTCTACCATCTTTGAATGCAA 101 175 2692 Antisense
Sequence Source Affymetrix Proprietary Database