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[190748_at] man(9)-alpha-mannosidase

Description ZC506.1 /REP_DB=WormBase Gene ID /WP=CE01679 /TR=Q09641 /GB=CAA87371.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=man(9)-alpha-mannosidase
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 55      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 631.2
(3)
P 		399.2
(-1.4)
P 		493.7
(0.4)
P 		312.8
(-3)
P 		318
B 594.4
(3)
P 		429.7
(-3)
P 		505.1
(-0.3)
P 		471.8
(-1.5)
P 		165
C 656
(3)
P 		384.8
(-3)
P 		468
(-1.2)
P 		406.5
(-2.5)
P 		271
avr 627.2
(3) 		404.6
(-2.8) 		488.9
(-0.6) 		397
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 350.6
(-1.6)
P 		666.1
(3)
P 		255.3
(-3)
P 		497.1
(0.5)
P 		375.2
(-1.2)
P 		348
(-1.6)
P 		411
B 358.9
(-0.6)
P 		438.6
(2)
P 		321.4
(-1.8)
P 		468.3
(3)
P 		335.5
(-1.3)
P 		284.3
(-3)
P 		184
C 592.7
(3)
P 		476.6
(0.9)
P 		463.5
(0.6)
P 		328.2
(-1.9)
P 		359.9
(-1.3)
P 		266.7
(-3)
P 		326
avr 434.1
(0.5) 		527.1
(3) 		346.7
(-1.8) 		431.2
(0.5) 		356.9
(-1.5) 		299.7
(-3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 229.8
(3)
P 		86.7
(-1.7)
P 		129.1
(-0.3)
P 		45.8
(-3)
P 		184
B 189.5
(3)
P 		106.1
(-2.6)
P 		117
(-1.9)
P 		100.5
(-3)
P 		89
C 217.1
(3)
P 		110.6
(-1.3)
P 		163.1
(0.8)
P 		68.5
(-3)
P 		149
avr 212.1
(3) 		101.1
(-1.7) 		136.4
(-0.2) 		71.6
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 64.6
(-2.7)
P 		236.9
(3)
P 		55.6
(-3)
P 		126.1
(-0.7)
P 		113.2
(-1.1)
P 		84.7
(-2)
P 		181
B 124.9
(1.1)
P 		146
(3)
P 		78.1
(-3)
P 		124
(1.1)
P 		136.3
(2.1)
P 		106
(-0.5)
P 		68
C 219.7
(3)
P 		145.4
(0.1)
P 		118
(-1)
P 		66
(-3)
P 		116.5
(-1)
P 		89.3
(-2.1)
P 		154
avr 136.4
(0.4) 		176.1
(3) 		83.9
(-3) 		105.4
(-1.6) 		122
(-0.5) 		93.3
(-2.4) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16009
Sequence Type Exemplar sequence
Representative Public ID ZC506.1 NCBI
Target Description ZC506.1 /REP_DB=WormBase Gene ID /WP=CE01679 /TR=Q09641 /GB=CAA87371.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=man(9)-alpha-mannosidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077270 NCBI Caenorhabditis elegans ZC506.1 (man(9)-alpha-mannosidase) mRNA, complete cds. 11/11 A 
GENEFINDER00000023348 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9958966:9964246:1 11/11 None
SNAP00000023343 ENSEMBL cdna:SNAP chromosome:CEL140:X:9959219:9961064:1 11/11 None
ZC506.1 ENSEMBL cdna:known chromosome:CEL140:X:9958892:9964665:1 gene:ZC506.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9958965-9961064(+) 100.0 100.0
Public Domain and Genome References
Gene Title man(9)-alpha-mannosidase
Ensembl ZC506.1
Entrez Gene 181210 Entrez gene
SwissProt Q09641 EMBL-EBI
WormBase CE37461 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20827.1.S1_AT similar to Putative alpha-mannosidase C1orf22 cfa
DROSOPHILA_2:1630203_AT dm
DROSGENOME1:146315_AT dm
CHICKEN:GGA.10298.1.S1_S_AT similar to Putative alpha-mannosidase C1orf22 gga
CHICKEN:GGAAFFX.26310.1.S1_AT similar to Putative alpha-mannosidase C1orf22 gga
HG-U133_PLUS_2:220342_X_AT chromosome 1 open reading frame 22 hs
HG-U133A:220342_X_AT chromosome 1 open reading frame 22 hs
HG-U133A_2:220342_X_AT chromosome 1 open reading frame 22 hs
HU35KSUBA:RC_AA256323_AT chromosome 1 open reading frame 22 hs
HU35KSUBB:RC_AA179387_AT chromosome 1 open reading frame 22 hs
HG-U133A:220926_S_AT chromosome 1 open reading frame 22 hs
HG-U133_PLUS_2:220926_S_AT chromosome 1 open reading frame 22 hs
HG-U133A_2:220926_S_AT chromosome 1 open reading frame 22 hs
U133_X3P:G8922223_3P_S_AT chromosome 1 open reading frame 22 hs
U133_X3P:G13376781_3P_S_AT chromosome 1 open reading frame 22 hs
U133_X3P:HS.301997.1.S1_3P_S_AT chromosome 1 open reading frame 22 hs
HG-U133_PLUS_2:223243_S_AT chromosome 1 open reading frame 22 hs
HG-U133B:223243_S_AT chromosome 1 open reading frame 22 hs
HG-U95B:59633_AT chromosome 1 open reading frame 22 hs
HG-U95C:65608_AT chromosome 1 open reading frame 22 hs
HG-U95E:90857_AT chromosome 1 open reading frame 22 hs
HG-U95C:56528_R_AT Chromosome 1 open reading frame 22 hs
MG-U74AV2:104114_AT RIKEN cDNA 2310050N11 gene mm
MOE430A:1460401_AT RIKEN cDNA 2310050N11 gene mm
MOUSE430A_2:1460401_AT RIKEN cDNA 2310050N11 gene mm
MOUSE430_2:1460401_AT RIKEN cDNA 2310050N11 gene mm
MG-U74BV2:105544_AT RIKEN cDNA 2310050N11 gene, mRNA (cDNA clone IMAGE:3984921) mm
MG-U74BV2:110546_AT RIKEN cDNA 2310050N11 gene, mRNA (cDNA clone IMAGE:3984921) mm
MOE430B:1459133_AT RIKEN cDNA 2310050N11 gene, mRNA (cDNA clone IMAGE:3984921) mm
MOUSE430_2:1459133_AT RIKEN cDNA 2310050N11 gene, mRNA (cDNA clone IMAGE:3984921) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6487 protein amino acid N-linked glycosylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87371 Hypothetical protein ZC506.1 [Caenorhabditis elegans] ref|NP_509671.3| ZC506.1 [Caenorhabditis elegans] 0.0
blast CAE58760 Hypothetical protein CBG01952 [Caenorhabditis briggsae] 0.0
blast XP_193956 PREDICTED: hypothetical protein LOC66967 [Mus musculus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001382 EMBL-EBI Glycoside hydrolase, family 47 1.0E-126
Pfam IPR003137 EMBL-EBI Protease-associated PA 1.6E-29
Pfam IPR001382 EMBL-EBI Glycoside hydrolase, family 47 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190748_AT
gcacaagttcttgcctgaggctttcactcatgattttcaagtacactgggctgaacaccc
aatccgacctgaatttgtagaaagtacctacttcttgtatcgagctaccaaggatcccca
ttacttgcatgttgcgaagcagattatggatagtatcaacaagtatgtgaaagtgccttg
cggatttgctgctttaaaagatattcgaactatggtcaaagaagatcaaatggaatcgtt
cgtactttcggaaactttcaaatatctctacatgatcttcactgatcctgaagatctaat
gtttgatcccgatcactacgtacttaccacagaggctcacttcttgcctttaagcattgg
acacaaggagaaaatagaaaataaaataaacccacgtcgaatgatattgcgagcggacga
gccacagcagaaaaactacgtgtgtgcaaacccaatcgatttcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAAGTTCTTGCCTGAGGCTTTC 14 317 1080 Antisense
GAGGCTTTCACTCATGATTTTCAAG 338 405 1096 Antisense
AACACCCAATCCGACCTGAATTTGT 647 135 1133 Antisense
GTACCTACTTCTTGTATCGAGCTAC 57 459 1163 Antisense
ATCCCCATTACTTGCATGTTGCGAA 468 37 1193 Antisense
TGAAAGTGCCTTGCGGATTTGCTGC 11 573 1247 Antisense
TTTGATCCCGATCACTACGTACTTA 258 659 1381 Antisense
CGTACTTACCACAGAGGCTCACTTC 15 245 1398 Antisense
GCTCACTTCTTGCCTTTAAGCATTG 429 301 1414 Antisense
TGATATTGCGAGCGGACGAGCCACA 530 561 1481 Antisense
GTGTGCAAACCCAATCGATTTCACG 600 487 1521 Antisense
Sequence Source Affymetrix Proprietary Database