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[190747_s_at] tetraspanin /// tetraspanin

Description Y45F10B.1 /REP_DB=WormBase Gene ID /WP=CE26102 /GEN=tsp-5 /TR=O62466 /GB=CAA16352.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 60      4grp_total > 22      6grp_highest_sub > 03_04      6grp_cgc > 94      6grp_high1_sub > 03_04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 221.7
(3)
P 		110.1
(-0.6)
P 		37.8
(-3)
A 		219.3
(2.9)
P 		184
B 246.4
(3)
P 		121.3
(-0.5)
P 		30
(-3)
A 		215.5
(2.1)
P 		216
C 232.1
(1.6)
P 		125.9
(-1.3)
P 		64.8
(-3)
P 		280.9
(3)
P 		216
avr 233.4
(2.8) 		119.1
(-0.7) 		44.2
(-3) 		238.6
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 133.1
(-0.7)
P 		51.8
(-3)
P 		265.7
(3)
P 		179
(0.6)
P 		111.5
(-1.3)
P 		148.2
(-0.3)
P 		214
B 187.1
(3)
P 		111.9
(-2)
P 		154
(0.8)
P 		157
(1)
P 		101.1
(-2.7)
P 		96.3
(-3)
P 		91
C 109.5
(-1.7)
P 		114.3
(-1.5)
P 		86.8
(-2.7)
P 		217.1
(3)
P 		81.1
(-3)
P 		135.8
(-0.6)
P 		136
avr 143.2
(0.3) 		92.7
(-3) 		168.8
(2) 		184.4
(3) 		97.9
(-2.7) 		126.8
(-0.8) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 80.7
(3)
P 		23.9
(-1.8)
P 		9.9
(-3)
A 		32.1
(-1.1)
P 		71
B 78.6
(3)
P 		30
(-1.1)
P 		7
(-3)
A 		45.9
(0.3)
P 		72
C 76.8
(3)
P 		36.2
(-1.5)
P 		22.6
(-3)
P 		47.4
(-0.3)
P 		54
avr 78.7
(3) 		30
(-1.5) 		13.2
(-3) 		41.8
(-0.4) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 24.5
(-2.1)
P 		18.4
(-3)
P 		57.9
(3)
P 		45.4
(1.1)
P 		33.7
(-0.7)
P 		36.1
(-0.3)
P 		40
B 65.1
(3)
P 		37.2
(-2.7)
P 		37.4
(-2.7)
P 		41.6
(-1.8)
P 		41.1
(-1.9)
P 		35.9
(-3)
P 		29
C 40.6
(1.7)
P 		34.9
(0.3)
P 		22.1
(-3)
P 		43.6
(2.5)
P 		26.2
(-1.9)
P 		45.5
(3)
P 		23
avr 43.4
(3) 		30.2
(-3) 		39.1
(1) 		43.5
(3) 		33.7
(-1.4) 		39.2
(1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190747_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9884
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.1 NCBI
Target Description Y45F10B.1 /REP_DB=WormBase Gene ID /WP=CE26102 /GEN=tsp-5 /TR=O62466 /GB=CAA16352.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069995(11), NM_070220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069995 NCBI Caenorhabditis elegans F53B2.2 (tetraspanin) mRNA, complete cds. 11/11 None
NM_070220 NCBI Caenorhabditis elegans Y45F10B.1 (tetraspanin) mRNA, complete cds. 11/11 None
GENEFINDER00000007864 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13590576:13591409:-1 9/11 None
SNAP00000026519 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12519143:12519905:-1 9/11 None
GENEFINDER00000026526 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12519143:12520203:-1 11/11 None
F53B2.2 ENSEMBL cdna:known chromosome:CEL140:IV:12519143:12520203:-1 gene:F53B2.2 11/11 None
Y45F10B.1 ENSEMBL cdna:known chromosome:CEL140:IV:13590576:13591714:-1 gene:Y45F10B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007859 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13590581-13591720(-) 100.0 100.0
chrIV:12519148-12520209(-) 96.05 96.05
Public Domain and Genome References
Gene Title tetraspanin
tetraspanin
Gene Symbol tsp-4
tsp-5
Ensembl F53B2.2
Y45F10B.1
Entrez Gene 192060 Entrez gene
192061 Entrez gene
SwissProt Q20707 EMBL-EBI
O62466 EMBL-EBI
WormBase CE26463 Wormbase
CE35665 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16352 Hypothetical protein Y45F10B.1 [Caenorhabditis elegans] ref|NP_502621.3| Y45F10B.1 [Caenorhabditis elegans] 1.0E-115
blast CAA98130 Hypothetical protein F53B2.2 [Caenorhabditis elegans] ref|NP_502396.1| F53B2.2 [Caenorhabditis elegans] 1.0E-102
blast CAA16352 Hypothetical protein Y45F10B.1 [Caenorhabditis elegans] ref|NP_502621.3| Y45F10B.1 [Caenorhabditis elegans] 1.0E-100
blast CAA98130 Hypothetical protein F53B2.2 [Caenorhabditis elegans] ref|NP_502396.1| F53B2.2 [Caenorhabditis elegans] 1.0E-99
blast CAA98130 Hypothetical protein F53B2.2 [Caenorhabditis elegans] ref|NP_502396.1| F53B2.2 [Caenorhabditis elegans] 4.0E-97
blast CAA16352 Hypothetical protein Y45F10B.1 [Caenorhabditis elegans] ref|NP_502621.3| Y45F10B.1 [Caenorhabditis elegans] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.4E-18
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 9.4E-19
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 7.0E-14
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.4E-14
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 1.5E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502396.1 4 13-35,55-77,84-106,194-216
NP_502621.3 4 12-34,66-88,95-117,205-227
F53B2.2 4 13-35,55-77,84-106,194-216
Y45F10B.1 4 12-34,66-88,95-117,205-227
GENEFINDER00000007864 3 4-21,26-48,136-158
SNAP00000026519 3 4-21,26-48,136-158
GENEFINDER00000026526 4 12-34,66-88,95-117,205-227
Sequence
Target Sequence 
>C. ELEGANS:190747_S_AT
aattagccaatttccttttcttcatcctcaacttgggactaatcgttagtcaatttcgac
tctatttttatgtataccggacaatttctataatgattgggggatgtatggtagttctcg
gtttctgcggctgcttcgcagtgggctttggaagcaaaactgcgttgtccgtacatctcg
tattggtttttatagttttcgtcgtaaaaattgtggcaattgtaatgtttttagcgaata
atgatcatcttcgaagagagtttgtcggtgtttatcgtgacgaattggttgcaaactatc
ataacaattcacgaactaaaaacactcttgattgggttcacactagtttgaaatgctgtg
gagcaaacggttgtgaagatttcctaccagccggaaattttccaacatcttgtgaatgtg
gtacaaagaatgcagtggtacgtatggaaggatgtgctctcatcacttgggcagtatttg
aagatggaacactccaagttgcttttcttggattgatctgcatgttgattgagcttggat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTAGCCAATTTCCTTTTCTTCAT 667 175 35 Antisense
TTCTTCATCCTCAACTTGGGACTAA 638 687 52 Antisense
GGGGATGTATGGTAGTTCTCGGTTT 423 497 134 Antisense
GAAGCAAAACTGCGTTGTCCGTACA 37 341 185 Antisense
TGTCCGTACATCTCGTATTGGTTTT 668 557 200 Antisense
GAGAGTTTGTCGGTGTTTATCGTGA 629 395 290 Antisense
TTATCGTGACGAATTGGTTGCAAAC 488 679 306 Antisense
TCTTGATTGGGTTCACACTAGTTTG 533 617 360 Antisense
GGTACGTATGGAAGGATGTGCTCTC 169 505 471 Antisense
TGTGCTCTCATCACTTGGGCAGTAT 139 557 487 Antisense
TCTGCATGTTGATTGAGCTTGGATT 270 609 551 Antisense
Sequence Source Affymetrix Proprietary Database