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[190744_at] UDP-glucosyltransferase

Description C04F5.7 /REP_DB=WormBase Gene ID /WP=CE19671 /TR=Q9GZD1 /GB=AAF98598.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster 6grp_high1_10_10 > 81      4grp_high_8_8 > 38      6grp_total > 83      4grp_total > 41      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 123
(-3)
P 		347.7
(2.7)
P 		360.3
(3)
P 		244.7
(0.1)
P 		237
B 137.4
(-3)
P 		314.6
(1.8)
P 		358
(3)
P 		273.1
(0.7)
P 		221
C 104.1
(-3)
M 		305.8
(2.7)
P 		315.9
(3)
P 		257.3
(1.3)
P 		212
avr 121.5
(-3) 		322.7
(2.4) 		344.7
(3) 		258.4
(0.7) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 99.9
(-3)
A 		460.4
(-0.1)
P 		618.1
(1.2)
P 		800.9
(2.6)
P 		845
(3)
P 		424.6
(-0.4)
P 		745
B 187
(-3)
P 		609.8
(1)
P 		601.2
(1)
P 		716.4
(2.1)
P 		814.8
(3)
P 		464.5
(-0.3)
P 		628
C 169
(-3)
P 		610.8
(1.4)
P 		578.9
(1.1)
P 		765.5
(3)
P 		717.4
(2.5)
P 		504.5
(0.4)
P 		597
avr 152
(-3) 		560.3
(0.8) 		599.4
(1.2) 		760.9
(2.7) 		792.4
(3) 		464.5
(-0.1) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 44.8
(-2.1)
P 		75.5
(1.1)
P 		94.2
(3)
P 		35.8
(-3)
P 		58
B 43.8
(-3)
P 		77.7
(2.2)
P 		83
(3)
P 		58.2
(-0.8)
P 		39
C 34.5
(-3)
M 		87.9
(1.2)
P 		110.1
(3)
P 		43.4
(-2.3)
P 		76
avr 41
(-3) 		80.4
(1.3) 		95.8
(3) 		45.8
(-2.5) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 18.4
(-3)
A 		163.7
(0.7)
P 		134.6
(-0.1)
P 		203.1
(1.7)
P 		255
(3)
P 		103.4
(-0.8)
P 		237
B 65.1
(-3)
P 		203
(0.1)
P 		146
(-1.2)
P 		189.8
(-0.2)
P 		331
(3)
P 		173.2
(-0.6)
P 		266
C 62.6
(-3)
P 		186.4
(1.4)
P 		147.3
(-0)
P 		153.9
(0.2)
P 		232.2
(3)
P 		168.9
(0.8)
P 		170
avr 48.7
(-3) 		184.4
(0.6) 		142.6
(-0.5) 		182.3
(0.6) 		272.7
(3) 		148.5
(-0.3) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15422
Sequence Type Exemplar sequence
Representative Public ID C04F5.7 NCBI
Target Description C04F5.7 /REP_DB=WormBase Gene ID /WP=CE19671 /TR=Q9GZD1 /GB=AAF98598.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071968 NCBI Caenorhabditis elegans C04F5.7 (UDP-glucosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000034405 ENSEMBL cdna:SNAP chromosome:CEL140:V:5105618:5110555:-1 11/11 None
GENEFINDER00000034414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5097177:5110579:-1 11/11 None
C04F5.7 ENSEMBL cdna:known chromosome:CEL140:V:5108008:5110579:-1 gene:C04F5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5108007-5110579(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucosyltransferase
Gene Symbol ugt-63
Ensembl C04F5.7
Entrez Gene 182223 Entrez gene
SwissProt Q9GZD1 EMBL-EBI
WormBase CE19671 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF98598 Udp-glucuronosyltransferase protein 63 [Caenorhabditis elegans] ref|NP_504369.1| C04F5.7 [Caenorhabditis elegans] 0.0
blast CAE64076 Hypothetical protein CBG08680 [Caenorhabditis briggsae] 0.0
blast AAB65381 Udp-glucuronosyltransferase protein 64 [Caenorhabditis elegans] ref|NP_503978.1| C07G3.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504369.1 1 483-505
C04F5.7 1 483-505
SNAP00000034405 3 508-530,620-642,652-674
GENEFINDER00000034414 20 561-583,596-615,645-667,680-699,724-746,781-803,813-835,937-959,969-988,1053-1075,1097-1119,1154-1176,1186-1208,1274-1296,1311-1330,1395-1414,1439-1461,1496-1518,1528-1547,1616-1638
Sequence
Target Sequence 
>C. ELEGANS:190744_AT
gacgcgtttgcaactgtagtcaatagactctcggaatatcgaattatttggagtatgaaa
ggcgaaagaccccctggattgaagaagcacgtgaagacatcttcatgggttccacagaat
cagattttacatcataacaagacggttttatttttgagtcatggaggattgaaaagcacg
aaagaagtaatttgctcagcaactcctacaattttcgtgccaatgttcggtgaacagact
cggaatgcttggctcatcaaagagaaaggattcgcacgaataatgaataaattcaaaatc
aatgtggacgaacttgatactcatatgagagaagttttagagcatccgaattatcaacaa
aatgcaaacaaatttcttacatactacatggatcaacctattccaacgcttgacgaagga
gcttttaaattcaatcgtctagtcaaatatggcgggaaaatgccgtctcatttttatcca
aaatcacttgatctctcttattttactgttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGTTTGCAACTGTAGTCAATA 420 381 964 Antisense
TGAAAGGCGAAAGACCCCCTGGATT 393 569 1019 Antisense
GACCCCCTGGATTGAAGAAGCACGT 579 381 1031 Antisense
AAGACATCTTCATGGGTTCCACAGA 245 153 1057 Antisense
ATTTGCTCAGCAACTCCTACAATTT 468 17 1153 Antisense
CAATTTTCGTGCCAATGTTCGGTGA 65 179 1172 Antisense
GAACAGACTCGGAATGCTTGGCTCA 546 351 1195 Antisense
GATCAACCTATTCCAACGCTTGACG 343 421 1354 Antisense
GGAGCTTTTAAATTCAATCGTCTAG 343 521 1381 Antisense
TATGGCGGGAAAATGCCGTCTCATT 403 655 1411 Antisense
GATCTCTCTTATTTTACTGTTCTCA 383 419 1453 Antisense
Sequence Source Affymetrix Proprietary Database