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[190743_at]

Description C02F5.9 /REP_DB=WormBase Gene ID /WP=CE26745 /GEN=pbs-6 /GB=AAK71356.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Proteasome component C5
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 54      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 80      6grp_total > 44      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 187.2
(-1.6)
P 		156.5
(-3)
P 		218.3
(-0.2)
P 		287.5
(3)
P 		131
B 187.5
(-1.9)
P 		157
(-3)
P 		227.4
(-0.4)
P 		319.4
(3)
P 		162
C 240.5
(-1.2)
P 		187.5
(-3)
P 		243.7
(-1.1)
P 		365.8
(3)
P 		178
avr 205.1
(-1.5) 		167
(-3) 		229.8
(-0.6) 		324.2
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 263.4
(2.2)
P 		192
(-0.5)
P 		283.4
(3)
P 		221.1
(0.6)
P 		125.5
(-3)
P 		175.9
(-1.1)
P 		158
B 210.7
(-2.5)
P 		213.9
(-2.3)
P 		305.7
(3)
P 		215.3
(-2.2)
P 		202.3
(-3)
P 		251.7
(-0.1)
P 		103
C 216.8
(2.1)
P 		230.9
(3)
P 		223.1
(2.5)
P 		176.6
(-0.4)
P 		134.8
(-3)
P 		231
(3)
P 		96
avr 230.3
(0.9) 		212.3
(-0) 		270.7
(3) 		204.3
(-0.4) 		154.2
(-3) 		219.5
(0.4) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 68.2
(3)
P 		34
(-3)
P 		57.1
(1.1)
P 		42.1
(-1.6)
P 		34
B 59.8
(1.3)
P 		38.8
(-3)
P 		52.7
(-0.2)
P 		68.1
(3)
P 		29
C 79.6
(2)
P 		53.9
(-3)
P 		84.9
(3)
P 		61.7
(-1.5)
P 		31
avr 69.2
(3) 		42.2
(-3) 		64.9
(2) 		57.3
(0.4) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 48.6
(-0.9)
P 		68.3
(3)
P 		61.7
(1.7)
P 		56.1
(0.6)
P 		37.9
(-3)
P 		42.8
(-2)
P 		30
B 73.3
(-0.3)
P 		71.2
(-0.7)
P 		74.2
(-0.2)
P 		57
(-3)
P 		82.2
(1.1)
P 		93.9
(3)
P 		37
C 80.4
(3)
P 		70.5
(1.7)
P 		56.8
(-0.2)
P 		35.5
(-3)
P 		43.6
(-1.9)
P 		77.3
(2.6)
P 		45
avr 67.4
(1.9) 		70
(2.6) 		64.2
(1) 		49.5
(-3) 		54.6
(-1.6) 		71.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7208
Sequence Type Exemplar sequence
Representative Public ID C02F5.9 NCBI
Target Description C02F5.9 /REP_DB=WormBase Gene ID /WP=CE26745 /GEN=pbs-6 /GB=AAK71356.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Proteasome component C5
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066404 NCBI Caenorhabditis elegans C02F5.12 (C02F5.12) mRNA, complete cds. 11/11 None
SNAP00000031507 ENSEMBL cdna:SNAP chromosome:CEL140:III:8240860:8242785:-1 11/11 None
GENEFINDER00000031521 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8240860:8242785:-1 11/11 None
C02F5.12 ENSEMBL cdna:known chromosome:CEL140:III:8240860:8242022:-1 gene:C02F5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8240855-8244004(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.12
Entrez Gene 182124 Entrez gene
SwissProt Q95QY7 EMBL-EBI
WormBase CE26744 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK71355 Hypothetical protein C02F5.12 [Caenorhabditis elegans] 0.0
blast AAK71355 Hypothetical protein C02F5.12 [Caenorhabditis elegans] 1.0E-127
blast NP_498805 C02F5.12 [Caenorhabditis elegans] sp|Q95QY7|YKKA_CAEEL Hypothetical zinc finger protein C02F5.12 in chromosome III 1.0E-127
blast NP_498805 C02F5.12 [Caenorhabditis elegans] sp|Q95QY7|YKKA_CAEEL Hypothetical zinc finger protein C02F5.12 in chromosome III 1.0E-126
blast CAE59560 Hypothetical protein CBG02957 [Caenorhabditis briggsae] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:190743_AT
acttcaggatcatcaagtttctcattaaatgattctgaacaggcaaatgaacaagaaaga
aatataattgaagatcttcttcgtcaacaaatgtttactgaaagcaagataaagaatgaa
gaagcaagtttgctaaaaggtctaaaaaagggattaggagaagaattggaaagttcacat
gcgaactatgtaattacttgcaactttccgggatgtggtctcaaatacaactggcgtgta
aaatatggaaaacttcgacttctagatcatgctctgactcattcaaatcgaaaaattcct
tgcaagctgtgtggtttcgagtgcacaaatgtccgtagaatgcgttctcattatgcaaaa
gctcatccaaatgaacgtgtcgaaggttacggtatgaaggcgttggtgagtggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCAGGATCATCAAGTTTCTCAT 586 103 1081 Antisense
GTAATTACTTGCAACTTTCCGGGAT 239 461 1270 Antisense
AACTTTCCGGGATGTGGTCTCAAAT 650 93 1282 Antisense
GTGGTCTCAAATACAACTGGCGTGT 569 487 1295 Antisense
AACTTCGACTTCTAGATCATGCTCT 172 139 1331 Antisense
TAGATCATGCTCTGACTCATTCAAA 258 653 1343 Antisense
CGAAAAATTCCTTGCAAGCTGTGTG 237 251 1369 Antisense
GTGGTTTCGAGTGCACAAATGTCCG 420 487 1391 Antisense
AATGTCCGTAGAATGCGTTCTCATT 379 161 1408 Antisense
GTTCTCATTATGCAAAAGCTCATCC 332 443 1424 Antisense
GGTATGAAGGCGTTGGTGAGTGGAG 23 503 1471 Antisense
Sequence Source Affymetrix Proprietary Database